Other packages > Find by keyword >

crispRdesignR  

Guide Sequence Design for CRISPR/Cas9
View on CRAN: Click here


Download and install crispRdesignR package within the R console
Install from CRAN:
install.packages("crispRdesignR")

Install from Github:
library("remotes")
install_github("cran/crispRdesignR")

Install by package version:
library("remotes")
install_version("crispRdesignR", "1.1.7")



Attach the package and use:
library("crispRdesignR")
Maintained by
Dylan Beeber
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-26
Latest Update: 2023-04-12
Description:
Designs guide sequences for CRISPR/Cas9 genome editing and provides information on sequence features pertinent to guide efficiency. Sequence features include annotated off-target predictions in a user-selected genome and a predicted efficiency score based on the model described in Doench et al. (2016) . Users are able to import additional genomes and genome annotation files to use when searching and annotating off-target hits. All guide sequences and off-target data can be generated through the 'R' console with sgRNA_Design() or through 'crispRdesignR's' user interface with crispRdesignRUI(). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and the associated protein Cas9 refer to a technique used in genome editing.
How to cite:
Dylan Beeber (2020). crispRdesignR: Guide Sequence Design for CRISPR/Cas9. R package version 1.1.7, https://cran.r-project.org/web/packages/crispRdesignR. Accessed 22 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:29), 1.1.5 (2020-05-26 12:00), 1.1.6 (2021-01-11 08:00)
Other packages that cited crispRdesignR R package
View crispRdesignR citation profile
Other R packages that crispRdesignR depends, imports, suggests or enhances
Complete documentation for crispRdesignR
Functions, R codes and Examples using the crispRdesignR R package
Some associated functions: Doench_2016_Processing . FindsgRNAfunction . crispRdesignRUI . getofftargetdata . getsgRNAdata . sgRNA_design . 
Some associated R codes: Doench_2016_Processing.R . FindsgRNAfunction.R . crispRdesignRUI.R . getofftargetdata.R . getsgRNAdata.R . sgRNA_design.R .  Full crispRdesignR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
loon  
Interactive Statistical Data Visualization
An extendable toolkit for interactive data visualization and exploration. ...
Download / Learn more Package Citations See dependency  
CTM  
A Text Mining Toolkit for Chinese Document
The CTM package is designed to solve problems of text mining and is specific for Chinese document. ...
Download / Learn more Package Citations See dependency  
ISOweek  
Week of the year and weekday according to ISO 8601
This is an substitute for the %V and %u formats which are not implemented on Windows. In addition, ...
Download / Learn more Package Citations See dependency  
bayesmeta  
Bayesian Random-Effects Meta-Analysis and Meta-Regression
A collection of functions allowing to derive the posterior distribution of the model parameters in r ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA