Other packages > Find by keyword >

crispRdesignR  

Guide Sequence Design for CRISPR/Cas9
View on CRAN: Click here


Download and install crispRdesignR package within the R console
Install from CRAN:
install.packages("crispRdesignR")

Install from Github:
library("remotes")
install_github("cran/crispRdesignR")

Install by package version:
library("remotes")
install_version("crispRdesignR", "1.1.7")



Attach the package and use:
library("crispRdesignR")
Maintained by
Dylan Beeber
[Scholar Profile | Author Map]
First Published: 2020-05-26
Latest Update: 2023-04-12
Description:
Designs guide sequences for CRISPR/Cas9 genome editing and provides information on sequence features pertinent to guide efficiency. Sequence features include annotated off-target predictions in a user-selected genome and a predicted efficiency score based on the model described in Doench et al. (2016) . Users are able to import additional genomes and genome annotation files to use when searching and annotating off-target hits. All guide sequences and off-target data can be generated through the 'R' console with sgRNA_Design() or through 'crispRdesignR's' user interface with crispRdesignRUI(). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and the associated protein Cas9 refer to a technique used in genome editing.
How to cite:
Dylan Beeber (2020). crispRdesignR: Guide Sequence Design for CRISPR/Cas9. R package version 1.1.7, https://cran.r-project.org/web/packages/crispRdesignR. Accessed 11 May. 2025.
Previous versions and publish date:
1.1.5 (2020-05-26 12:00), 1.1.6 (2021-01-11 08:00)
Other packages that cited crispRdesignR R package
View crispRdesignR citation profile
Other R packages that crispRdesignR depends, imports, suggests or enhances
Complete documentation for crispRdesignR
Functions, R codes and Examples using the crispRdesignR R package
Some associated functions: Doench_2016_Processing . FindsgRNAfunction . crispRdesignRUI . getofftargetdata . getsgRNAdata . sgRNA_design . 
Some associated R codes: Doench_2016_Processing.R . FindsgRNAfunction.R . crispRdesignRUI.R . getofftargetdata.R . getsgRNAdata.R . sgRNA_design.R .  Full crispRdesignR package functions and examples
Downloads during the last 30 days
04/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/0105/0205/0305/0405/0505/0605/0705/0805/0905/10Downloads for crispRdesignR01020304050607080TrendBars

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
cliapp  
Create Rich Command Line Applications
Create rich command line applications, with colors, headings, lists, alerts, progress bars, etc. It ...
Download / Learn more Package Citations See dependency  
betaSandwich  
Robust Confidence Intervals for Standardized Regression Coefficients
Generates robust confidence intervals for standardized regression coefficients using heteroskedasti ...
Download / Learn more Package Citations See dependency  
PhySortR  
A Fast, Flexible Tool for Sorting Phylogenetic Trees
Screens and sorts phylogenetic trees in both traditional and extended Newick format. Allows for the ...
Download / Learn more Package Citations See dependency  
hash  
Full Featured Implementation of Hash Tables/Associative Arrays/Dictionaries
Implements a data structure similar to hashes in Perl and dictionaries in Python but with a purposef ...
Download / Learn more Package Citations See dependency  
bootImpute  
Bootstrap Inference for Multiple Imputation
Bootstraps and imputes incomplete datasets. Then performs inference on estimates obtained from analy ...
Download / Learn more Package Citations See dependency  

24,223

R Packages

207,311

Dependencies

65,402

Author Associations

24,224

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA