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craftgrn  

Integrative Chromatin Accessibility and RNA Framework for Gene Regulatory Networks
View on CRAN: Click here


Download and install craftgrn package within the R console
Install from CRAN:
install.packages("craftgrn")

Install from Github:
library("remotes")
install_github("cran/craftgrn")

Install by package version:
library("remotes")
install_version("craftgrn", "0.1.7")



Attach the package and use:
library("craftgrn")
Maintained by
Yaoxiang Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-18
Latest Update: 2026-06-18
Description:
Provides a reproducible framework for constructing and comparing gene regulatory networks by integrating chromatin accessibility footprint scores with matched RNA expression data. It implements context-specific enhancer-gene linking, transcription factor focused network analysis, differential network analysis, and regulatory topic modeling workflows for systematic exploration of gene regulation across conditions. Methodological background is available at <doi:10.1038/s41467-020-18035-1>, <https://www.jmlr.org/papers/v3/blei03a.html>, and <doi:10.48550/arXiv.1510.08628>.
How to cite:
Yaoxiang Li (2026). craftgrn: Integrative Chromatin Accessibility and RNA Framework for Gene Regulatory Networks. R package version 0.1.7, https://cran.r-project.org/web/packages/craftgrn. Accessed 25 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:28), 0.1.6 (2026-06-18 18:50)
Other packages that cited craftgrn R package
View craftgrn citation profile
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Complete documentation for craftgrn
Functions, R codes and Examples using the craftgrn R package
Full craftgrn package functions and examples
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