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cpam  

Changepoint Additive Models for Time Series Omics Data
View on CRAN: Click here


Download and install cpam package within the R console
Install from CRAN:
install.packages("cpam")

Install from Github:
library("remotes")
install_github("cran/cpam")

Install by package version:
library("remotes")
install_version("cpam", "0.2.1")



Attach the package and use:
library("cpam")
Maintained by
Luke Yates
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-03-13
Latest Update: 2025-03-13
Description:
Provides a comprehensive framework for time series omics analysis, integrating changepoint detection, smooth and shape-constrained trends, and uncertainty quantification. It supports gene- and transcript-level inferences, p-value aggregation for improved power, and both case-only and case-control designs. It includes an interactive 'shiny' interface. The methods are described in Yates et al. (2024) <doi:10.1101/2024.12.22.630003>.
How to cite:
Luke Yates (2025). cpam: Changepoint Additive Models for Time Series Omics Data. R package version 0.2.1, https://cran.r-project.org/web/packages/cpam. Accessed 29 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:28), 0.1.3 (2025-03-13 14:20), 0.2.0 (2026-03-04 04:30)
Other packages that cited cpam R package
View cpam citation profile
Other R packages that cpam depends, imports, suggests or enhances
Complete documentation for cpam
Functions, R codes and Examples using the cpam R package
Full cpam package functions and examples
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