R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
countland
View on CRAN: Click
here
Download and install countland package within the R console
Install from CRAN:
install.packages("countland")
Install from Github:
library("remotes")
install_github("cran/countland") Install by package version:
library("remotes")
install_version("countland", "0.1.2") Attach the package and use:
library("countland")
Maintained by
Church Samuel H.
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-08-17
Latest Update: 2024-02-01
Description:
A set of functions for applying a
restricted linear algebra to the analysis of
count-based data. See the accompanying preprint
manuscript: "Normalizing need not be the norm:
count-based math for analyzing single-cell data"
Church et al (2022)
This tool is specifically designed to analyze
count matrices from single cell RNA sequencing
assays. The tools implement several count-based
approaches for standard steps in single-cell
RNA-seq analysis, including scoring genes and cells,
comparing cells and clustering, calculating differential
gene expression, and several methods for rank
reduction. There are many opportunities for further
optimization that may prove useful in the analysis of
other data. We provide the source code freely
available at
and encourage users and developers to fork the code for
their own purposes.
How to cite:
Church Samuel H. (2022). countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq. R package version 0.1.2, https://cran.r-project.org/web/packages/countland. Accessed 04 Jun. 2026.
Previous versions and publish date:
0.1.1 (2022-08-17 08:40)
Other packages that cited countland R package
View countland citation profile
Other R packages that countland depends,
imports, suggests or enhances
Complete documentation for countland
Functions, R codes and Examples using
the countland R package
Some associated functions: Center . Cluster . CountIndex . Dot . Embed . IMA . IMA_Compute_Init_Scaled . IMA_Update_Factor . IMA_init . IMA_params . Log . Normalize . PlotEigengap . PlotEmbedding . PlotGeneCounts . PlotIMA . PlotIMAElbow . PlotMarker . PlotSharedCounts . PrintGeneNumber . RankMarkerGenes . RemoveEmpty . RescaleVariance . RestoreCounts . RunIMA . ScikitManifoldSpectralEmbedding . ScoreCells . ScoreGenes . SharedCounts . Subsample . SubsampleCol . SubsetCells . SubsetGenes . countland-class . countland . listCols .
Some associated R codes: IMA.R . countland.R . countland_IMA.R . countland_cluster.R . countland_dot.R . countland_embed.R . countland_marker.R . countland_score.R . countland_shared_counts.R . countland_subsample.R . countland_subset.R . countland_utils.R . Full countland package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
golem
An opinionated framework for building a production-ready
'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Colin Fay (view profile)
AMPLE
Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management.
...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Finlay Scott (view profile)
crplyr
In order to facilitate analysis of datasets hosted on the Crunch
data platform ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Greg Freedman Ellis (view profile)
murphydiagram
Data and code for the paper by Ehm, Gneiting, Jordan and
Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Fabian Krueger (view profile)
shinybusy
Add indicators (spinner, progress bar, gif) in your 'shiny'
applications to show the user that the ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Victor Perrier (view profile)
27,268
R Packages
233,548
Dependencies
72,590
Author Associations
27,205
Publication Badges
