Other packages > Find by keyword >

countToFPKM  

Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
View on CRAN: Click here


Download and install countToFPKM package within the R console
Install from CRAN:
install.packages("countToFPKM")

Install from Github:
library("remotes")
install_github("cran/countToFPKM")

Install by package version:
library("remotes")
install_version("countToFPKM", "1.0")



Attach the package and use:
library("countToFPKM")
Maintained by
Ahmed Alhendi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-04-07
Latest Update: 2019-04-07
Description:
Implements the algorithm described in Trapnell,C. et al. (2010) . This function takes read counts matrix of RNA-Seq data, feature lengths which can be retrieved using 'biomaRt' package, and the mean fragment lengths which can be calculated using the 'CollectInsertSizeMetrics(Picard)' tool. It then returns a matrix of FPKM normalised data by library size and feature effective length. It also provides the user with a quick and reliable function to generate FPKM heatmap plot of the highly variable features in RNA-Seq dataset.
How to cite:
Ahmed Alhendi (2019). countToFPKM: Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM). R package version 1.0, https://cran.r-project.org/web/packages/countToFPKM. Accessed 07 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:28), 1.0 (2019-04-07 19:42)
Other packages that cited countToFPKM R package
View countToFPKM citation profile
Other R packages that countToFPKM depends, imports, suggests or enhances
Complete documentation for countToFPKM
Functions, R codes and Examples using the countToFPKM R package
Some associated functions: fpkm . fpkmheatmap . 
Some associated R codes: countToFPKM-internal.R .  Full countToFPKM package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
plaqr  
Partially Linear Additive Quantile Regression
Estimation, prediction, thresholding, transformation, and plotting for partially linear additive qua ...
Download / Learn more Package Citations See dependency  
blandr  
Bland-Altman Method Comparison
Carries out Bland Altman analyses (also known as a Tukey mean-difference plot) as described by JM B ...
Download / Learn more Package Citations See dependency  
ggTimeSeries  
Time Series Visualisations Using the Grammar of Graphics
Provides additional display mediums for time series visualisations. ...
Download / Learn more Package Citations See dependency  
splm  
Econometric Models for Spatial Panel Data
ML and GM estimation and diagnostic testing of econometric models for spatial panel data. ...
Download / Learn more Package Citations See dependency  
PairedData  
Paired Data Analysis
Many datasets and a set of graphics (based on ggplot2), statistics, effect sizes and hypothesis test ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA