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countHMM  

Penalized Estimation of Flexible Hidden Markov Models for Time Series of Counts
View on CRAN: Click here


Download and install countHMM package within the R console
Install from CRAN:
install.packages("countHMM")

Install from Github:
library("remotes")
install_github("cran/countHMM")

Install by package version:
library("remotes")
install_version("countHMM", "0.1.0")



Attach the package and use:
library("countHMM")
Maintained by
Timo Adam
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-04-24
Latest Update: 2019-04-24
Description:
Provides tools for penalized estimation of flexible hidden Markov models for time series of counts w/o the need to specify a (parametric) family of distributions. These include functions for model fitting, model checking, and state decoding. For details, see Adam, T., Langrock, R., and Wei
How to cite:
Timo Adam (2019). countHMM: Penalized Estimation of Flexible Hidden Markov Models for Time Series of Counts. R package version 0.1.0, https://cran.r-project.org/web/packages/countHMM. Accessed 29 Aug. 2026.
Previous versions and publish date:
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Complete documentation for countHMM
Functions, R codes and Examples using the countHMM R package
Some associated functions: fitMod . nLogLike . plotMod . plotObs . plotRes . pn2pw . psRes . pw2pn . stateDec . 
Some associated R codes: fitMod.R . nLogLike.R . plotMod.R . plotObs.R . plotRes.R . pn2pw.R . psRes.R . pw2pn.R . stateDec.R .  Full countHMM package functions and examples
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