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copyseparator  

Assembling Long Gene Copies from Short Read Data
View on CRAN: Click here


Download and install copyseparator package within the R console
Install from CRAN:
install.packages("copyseparator")

Install from Github:
library("remotes")
install_github("cran/copyseparator")

Install by package version:
library("remotes")
install_version("copyseparator", "1.2.0")



Attach the package and use:
library("copyseparator")
Maintained by
Lei Yang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-05-24
Latest Update: 2022-11-25
Description:
Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.
How to cite:
Lei Yang (2022). copyseparator: Assembling Long Gene Copies from Short Read Data. R package version 1.2.0, https://cran.r-project.org/web/packages/copyseparator. Accessed 27 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:28), 1.0.0 (2022-05-24 11:30), 1.1.0 (2022-07-06 15:10)
Other packages that cited copyseparator R package
View copyseparator citation profile
Other R packages that copyseparator depends, imports, suggests or enhances
Complete documentation for copyseparator
Functions, R codes and Examples using the copyseparator R package
Some associated functions: copy_assemble . copy_detect . copy_separate . copy_validate . sep_assem . subset_downsize . 
Some associated R codes: copy_assemble.R . copy_detect.R . copy_separate.R . copy_validate.R . sep_assem.R . subset_downsize.R .  Full copyseparator package functions and examples
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