Other packages > Find by keyword >

convertid  

Convert Gene IDs Between Each Other and Fetch Annotations from Biomart
View on CRAN: Click here


Download and install convertid package within the R console
Install from CRAN:
install.packages("convertid")

Install from Github:
library("remotes")
install_github("cran/convertid")

Install by package version:
library("remotes")
install_version("convertid", "0.1.12")



Attach the package and use:
library("convertid")
Maintained by
Vidal Fey
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-08-21
Latest Update: 2025-02-06
Description:
Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol.
How to cite:
Vidal Fey (2021). convertid: Convert Gene IDs Between Each Other and Fetch Annotations from Biomart. R package version 0.1.12, https://cran.r-project.org/web/packages/convertid. Accessed 26 Aug. 2026.
Previous versions and publish date:
(2026-08-24 18:21), 0.1.1 (2021-08-21 11:30), 0.1.2 (2021-09-02 21:00), 0.1.3 (2021-09-13 11:20), 0.1.5 (2023-10-05 02:10), 0.1.6 (2023-10-06 16:30), 0.1.7 (2023-11-04 17:50), 0.1.8 (2023-11-29 14:40), 0.1.10 (2025-02-06 13:40), 0.1.12 (2026-01-09 16:50), 0.2.0 (2026-02-03 10:40), 0.2.1 (2026-02-05 13:20), 0.3.0 (2026-04-01 11:40), 0.3.4 (2026-07-20 14:00)
Other packages that cited convertid R package
View convertid citation profile
Other R packages that convertid depends, imports, suggests or enhances
Complete documentation for convertid
Functions, R codes and Examples using the convertid R package
Some associated functions: convert.alias . convert.bm . convertId2 . convertid . dot-cache.writable . dot-create.cache . dot-get.Ensembl_config . dot-get.httr_config . dot-setCacheLocation . get.bm . likely_symbol . todisp2 . 
Some associated R codes: biomart.R . convertId2.R . get_symbol_aliases.R . unexported.R .  Full convertid package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

PCADSC  
Tools for Principal Component Analysis-Based Data Structure Comparisons
A suite of non-parametric, visual tools for assessing differences in data structures for two datase ...
Download / Learn more Package Citations See dependency  
ncodeR  
Techniques for Automated Classifiers
A set of techniques that can be used to develop, validate, and implement automated classifiers. A po ...
Download / Learn more Package Citations See dependency  
clinUtils  
General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example ...
Download / Learn more Package Citations See dependency  
SelvarMix  
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
Performs a regularization approach to variable selection in themodel-based clustering and classifica ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
RCytoGPS  
Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then imp ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA