Other packages > Find by keyword >

convertid  

Convert Gene IDs Between Each Other and Fetch Annotations from Biomart
View on CRAN: Click here


Download and install convertid package within the R console
Install from CRAN:
install.packages("convertid")

Install from Github:
library("remotes")
install_github("cran/convertid")

Install by package version:
library("remotes")
install_version("convertid", "0.1.12")



Attach the package and use:
library("convertid")
Maintained by
Vidal Fey
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-08-21
Latest Update: 2025-02-06
Description:
Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol.
How to cite:
Vidal Fey (2021). convertid: Convert Gene IDs Between Each Other and Fetch Annotations from Biomart. R package version 0.1.12, https://cran.r-project.org/web/packages/convertid. Accessed 04 Aug. 2026.
Previous versions and publish date:
(2026-07-20 14:00), 0.1.1 (2021-08-21 11:30), 0.1.2 (2021-09-02 21:00), 0.1.3 (2021-09-13 11:20), 0.1.5 (2023-10-05 02:10), 0.1.6 (2023-10-06 16:30), 0.1.7 (2023-11-04 17:50), 0.1.8 (2023-11-29 14:40), 0.1.10 (2025-02-06 13:40), 0.1.12 (2026-01-09 16:50), 0.2.0 (2026-02-03 10:40), 0.2.1 (2026-02-05 13:20), 0.3.0 (2026-04-01 11:40)
Other packages that cited convertid R package
View convertid citation profile
Other R packages that convertid depends, imports, suggests or enhances
Complete documentation for convertid
Functions, R codes and Examples using the convertid R package
Some associated functions: convert.alias . convert.bm . convertId2 . convertid . dot-cache.writable . dot-create.cache . dot-get.Ensembl_config . dot-get.httr_config . dot-setCacheLocation . get.bm . likely_symbol . todisp2 . 
Some associated R codes: biomart.R . convertId2.R . get_symbol_aliases.R . unexported.R .  Full convertid package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

sValues  
Measures of Sturdiness of Regression Coefficients
Implements the s-values proposed by Ed. Leamer. It provides a context-minimal approach for sensitivi ...
Download / Learn more Package Citations See dependency  
GLMMadaptive  
Generalized Linear Mixed Models using Adaptive Gaussian Quadrature
Fits generalized linear mixed models for a single grouping factor under maximum likelihood approxim ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
rCMA  
R-to-Java Interface for 'CMA-ES'
Tool for providing access to the Java version 'CMAEvolutionStrategy' of Nikolaus Hansen. 'CMA-ES' i ...
Download / Learn more Package Citations See dependency  
epigraphdb  
Interface Package for the 'EpiGraphDB' Platform
The interface package to access data from the 'EpiGraphDB' platform. It p ...
Download / Learn more Package Citations See dependency  
Maintainer: Yi Liu (view profile)
ggconf  
Simpler Appearance Modification of "ggplot2"
A flexible interface for ggplot2theme potentially saving 50 of your typing. ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA