Other packages > Find by keyword >

convertid  

Convert Gene IDs Between Each Other and Fetch Annotations from Biomart
View on CRAN: Click here


Download and install convertid package within the R console
Install from CRAN:
install.packages("convertid")

Install from Github:
library("remotes")
install_github("cran/convertid")

Install by package version:
library("remotes")
install_version("convertid", "0.1.8")



Attach the package and use:
library("convertid")
Maintained by
Vidal Fey
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-08-21
Latest Update: 2021-09-13
Description:
Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol.
How to cite:
Vidal Fey (2021). convertid: Convert Gene IDs Between Each Other and Fetch Annotations from Biomart. R package version 0.1.8, https://cran.r-project.org/web/packages/convertid. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.1 (2021-08-21 11:30), 0.1.2 (2021-09-02 21:00), 0.1.3 (2021-09-13 11:20), 0.1.5 (2023-10-05 02:10), 0.1.6 (2023-10-06 16:30), 0.1.7 (2023-11-04 17:50)
Other packages that cited convertid R package
View convertid citation profile
Other R packages that convertid depends, imports, suggests or enhances
Complete documentation for convertid
Functions, R codes and Examples using the convertid R package
Some associated functions: convert.alias . convert.bm . convertId2 . convertid . dot-cache.writable . dot-create.cache . dot-get.Ensembl_config . dot-get.httr_config . dot-setCacheLocation . get.bm . likely_symbol . todisp2 . 
Some associated R codes: biomart.R . convertId2.R . get_symbol_aliases.R . unexported.R .  Full convertid package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA