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convertid
View on CRAN: Click
here
Download and install convertid package within the R console
Install from CRAN:
install.packages("convertid")
Install from Github:
library("remotes")
install_github("cran/convertid")
Install by package version:
library("remotes")
install_version("convertid", "0.1.8")
Attach the package and use:
library("convertid")
Maintained by
Vidal Fey
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-08-21
Latest Update: 2021-09-13
Description:
Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but
that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function
in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the
'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes"
can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol()
attempts to determine the most likely current Gene Symbol.
How to cite:
Vidal Fey (2021). convertid: Convert Gene IDs Between Each Other and Fetch Annotations from Biomart. R package version 0.1.8, https://cran.r-project.org/web/packages/convertid
Previous versions and publish date:
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Other R packages that convertid depends,
imports, suggests or enhances
Functions, R codes and Examples using
the convertid R package
Some associated functions: convert.alias . convert.bm . convertId2 . convertid . dot-cache.writable . dot-create.cache . dot-get.Ensembl_config . dot-get.httr_config . dot-setCacheLocation . get.bm . likely_symbol . todisp2 .
Some associated R codes: biomart.R . convertId2.R . get_symbol_aliases.R . unexported.R . Full convertid package functions and examples
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