Other packages > Find by keyword >

colocalized  

Clusters of Colocalized Sequences
View on CRAN: Click here


Download and install colocalized package within the R console
Install from CRAN:
install.packages("colocalized")

Install from Github:
library("remotes")
install_github("cran/colocalized")

Install by package version:
library("remotes")
install_version("colocalized", "0.2.0")



Attach the package and use:
library("colocalized")
Maintained by
Stefan Golas
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-09-19
Latest Update: 2019-10-18
Description:
Also abbreviates to "CCSeq". Finds clusters of colocalized sequences in .bed annotation files up to a specified cut-off distance. Two sequences are colocalized if they are within the cut-off distance of each other, and clusters are sets of sequences where each sequence is colocalized to at least one other sequence in the cluster. For a set of .bed annotation tables provided in a list along with a cut-off distance, the program will output a file containing the locations of each cluster. Annotated .bed files are from the 'pwmscan' application at . Personal machines might crash or take excessively long depending on the number of annotated sequences in each file and whether chromsearch() or gensearch() is used.
How to cite:
Stefan Golas (2019). colocalized: Clusters of Colocalized Sequences. R package version 0.2.0, https://cran.r-project.org/web/packages/colocalized. Accessed 26 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:27), 0.1.0 (2019-09-19 11:00)
Other packages that cited colocalized R package
View colocalized citation profile
Other R packages that colocalized depends, imports, suggests or enhances
Complete documentation for colocalized
Functions, R codes and Examples using the colocalized R package
Some associated functions: ColocalizedFullSearch . chromsearch . colocalized . colocalized_sequential . gensearch . nfkb1 . nfkb2 . onedim_dist . relb . 
Some associated R codes: chromsearch.R . colocalized.R . gensearch.R . nfkb1.R . nfkb2.R . onedim_dist.R . relb.R .  Full colocalized package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

SelvarMix  
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
Performs a regularization approach to variable selection in themodel-based clustering and classifica ...
Download / Learn more Package Citations See dependency  
ncodeR  
Techniques for Automated Classifiers
A set of techniques that can be used to develop, validate, and implement automated classifiers. A po ...
Download / Learn more Package Citations See dependency  
PCADSC  
Tools for Principal Component Analysis-Based Data Structure Comparisons
A suite of non-parametric, visual tools for assessing differences in data structures for two datase ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
RCytoGPS  
Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then imp ...
Download / Learn more Package Citations See dependency  
leafgl  
High-Performance 'WebGl' Rendering for Package 'leaflet'
Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript l ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA