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colocalized
View on CRAN: Click
here
Download and install colocalized package within the R console
Install from CRAN:
install.packages("colocalized")
Install from Github:
library("remotes")
install_github("cran/colocalized") Install by package version:
library("remotes")
install_version("colocalized", "0.2.0") Attach the package and use:
library("colocalized")
Maintained by
Stefan Golas
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-09-19
Latest Update: 2019-10-18
Description:
Also abbreviates to "CCSeq". Finds clusters of colocalized sequences in .bed annotation files
up to a specified cut-off distance. Two sequences are colocalized if they
are within the cut-off distance of each other, and clusters are sets of
sequences where each sequence is colocalized to at least one other sequence
in the cluster. For a set of .bed annotation tables provided in a list
along with a cut-off distance, the program will output a file containing
the locations of each cluster. Annotated .bed files are from
the 'pwmscan' application at .
Personal machines might crash or take excessively long depending
on the number of annotated sequences in each file and whether chromsearch()
or gensearch() is used.
How to cite:
Stefan Golas (2019). colocalized: Clusters of Colocalized Sequences. R package version 0.2.0, https://cran.r-project.org/web/packages/colocalized. Accessed 06 Mar. 2026.
Previous versions and publish date:
0.1.0 (2019-09-19 11:00)
Other packages that cited colocalized R package
View colocalized citation profile
Other R packages that colocalized depends,
imports, suggests or enhances
Complete documentation for colocalized
Functions, R codes and Examples using
the colocalized R package
Some associated functions: ColocalizedFullSearch . chromsearch . colocalized . colocalized_sequential . gensearch . nfkb1 . nfkb2 . onedim_dist . relb .
Some associated R codes: chromsearch.R . colocalized.R . gensearch.R . nfkb1.R . nfkb2.R . onedim_dist.R . relb.R . Full colocalized package functions and examples
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