Other packages > Find by keyword >

coil  

Contextualization and Evaluation of COI-5P Barcode Data
View on CRAN: Click here


Download and install coil package within the R console
Install from CRAN:
install.packages("coil")

Install from Github:
library("remotes")
install_github("cran/coil")

Install by package version:
library("remotes")
install_version("coil", "1.2.4")



Attach the package and use:
library("coil")
Maintained by
Cameron M. Nugent
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-09
Latest Update: 2024-01-11
Description:
Designed for the cleaning, contextualization and assessment of cytochrome c oxidase I DNA barcode data (COI-5P, or the five prime portion of COI). It contains functions for placing COI-5P barcode sequences into a common reading frame, translating DNA sequences to amino acids and for assessing the likelihood that a given barcode sequence includes an insertion or deletion error. The error assessment relies on the comparison of input sequences against nucleotide and amino acid profile hidden Markov models (PHMMs) (for details see Durbin et al. 1998, ISBN: 9780521629713) trained on a taxonomically diverse set of reference sequences. The functions are provided as a complete pipeline and are also available individually for efficient and targeted analysis of barcode data.
How to cite:
Cameron M. Nugent (2019). coil: Contextualization and Evaluation of COI-5P Barcode Data. R package version 1.2.4, https://cran.r-project.org/web/packages/coil. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0.0 (2019-10-09 13:20), 1.0.1 (2019-10-16 21:20), 1.1.0 (2019-12-05 21:00), 1.2.1 (2020-02-03 20:30), 1.2.2 (2020-10-29 19:50), 1.2.3 (2021-04-20 20:20)
Other packages that cited coil R package
View coil citation profile
Other R packages that coil depends, imports, suggests or enhances
Complete documentation for coil
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
crossrun  
Joint Distribution of Number of Crossings and Longest Run
Joint distribution of number of crossings and the longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency  
pkgdepends  
Package Dependency Resolution and Downloads
Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency  
kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
deductive  
Data Correction and Imputation Using Deductive Methods
Attempt to repair inconsistencies and missing values in data records by using information from vali ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA