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codyn
View on CRAN: Click
here
Download and install codyn package within the R console
Install from CRAN:
install.packages("codyn")
Install from Github:
library("remotes")
install_github("cran/codyn") Install by package version:
library("remotes")
install_version("codyn", "2.0.5") Attach the package and use:
library("codyn")
Maintained by
Matthew B. Jones
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-10-20
Latest Update: 2020-12-01
Description:
Univariate and multivariate temporal and spatial diversity indices,
rank abundance curves, and community stability measures. The functions
implement measures that are either explicitly temporal and include the
option to calculate them over multiple replicates, or spatial and include
the option to calculate them over multiple time points. Functions fall into
five categories: static diversity indices, temporal diversity indices,
spatial diversity indices, rank abundance curves, and community stability
measures. The diversity indices are temporal and spatial analogs to
traditional diversity indices. Specifically, the package includes functions
to calculate community richness, evenness and diversity at a given point in
space and time. In addition, it contains functions to calculate species
turnover, mean rank shifts, and lags in community similarity between two
time points. Details of the methods are available in
Hallett et al. (2016) and Avolio
et al. (2019) .
How to cite:
Matthew B. Jones (2015). codyn: Community Dynamics Metrics. R package version 2.0.5, https://cran.r-project.org/web/packages/codyn. Accessed 26 Aug. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for codyn
Functions, R codes and Examples using
the codyn R package
Some associated functions: RAC_change . RAC_difference . abundance_change . abundance_difference . codyn-package . collins08 . community_diversity . community_stability . community_structure . confint.cyclic_shift . curve_change . curve_difference . cyclic_shift . knz_001d . mean_rank_shift . multivariate_change . multivariate_difference . pplots . rank_shift . rate_change . rate_change_interval . synchrony . turnover . variance_ratio .
Some associated R codes: RAC_change.R . RAC_difference.R . abundance_change.R . abundance_difference.R . codyn-package.R . community_diversity.R . community_stability.R . community_structure.R . curve_change.R . curve_difference.R . multivariate_change_and_difference.R . pool_replicates.R . rank_shift.R . rate_change.R . synchrony.R . temporal_torus_translation.R . turnover.R . utilities.R . variance_ratio.R . Full codyn package functions and examples
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