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codyn  

Community Dynamics Metrics
View on CRAN: Click here


Download and install codyn package within the R console
Install from CRAN:
install.packages("codyn")

Install from Github:
library("remotes")
install_github("cran/codyn")

Install by package version:
library("remotes")
install_version("codyn", "2.0.5")



Attach the package and use:
library("codyn")
Maintained by
Matthew B. Jones
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-10-20
Latest Update: 2020-12-01
Description:
Univariate and multivariate temporal and spatial diversity indices, rank abundance curves, and community stability measures. The functions implement measures that are either explicitly temporal and include the option to calculate them over multiple replicates, or spatial and include the option to calculate them over multiple time points. Functions fall into five categories: static diversity indices, temporal diversity indices, spatial diversity indices, rank abundance curves, and community stability measures. The diversity indices are temporal and spatial analogs to traditional diversity indices. Specifically, the package includes functions to calculate community richness, evenness and diversity at a given point in space and time. In addition, it contains functions to calculate species turnover, mean rank shifts, and lags in community similarity between two time points. Details of the methods are available in Hallett et al. (2016) and Avolio et al. (2019) .
How to cite:
Matthew B. Jones (2015). codyn: Community Dynamics Metrics. R package version 2.0.5, https://cran.r-project.org/web/packages/codyn. Accessed 04 Jun. 2026.
Previous versions and publish date:
1.0.0 (2015-10-20 08:06), 1.0.1 (2016-01-15 10:28), 1.1.0 (2016-04-27 13:30), 2.0.0 (2018-06-12 07:29), 2.0.1 (2019-03-08 22:02), 2.0.2 (2019-04-09 07:02), 2.0.3 (2019-09-17 20:50), 2.0.4 (2020-05-06 15:00)
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Complete documentation for codyn
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