Other packages > Find by keyword >

codyn  

Community Dynamics Metrics
View on CRAN: Click here


Download and install codyn package within the R console
Install from CRAN:
install.packages("codyn")

Install from Github:
library("remotes")
install_github("cran/codyn")

Install by package version:
library("remotes")
install_version("codyn", "2.0.6")



Attach the package and use:
library("codyn")
Maintained by
Matthew B. Jones
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-10-20
Latest Update: 2020-12-01
Description:
Univariate and multivariate temporal and spatial diversity indices, rank abundance curves, and community stability measures. The functions implement measures that are either explicitly temporal and include the option to calculate them over multiple replicates, or spatial and include the option to calculate them over multiple time points. Functions fall into five categories: static diversity indices, temporal diversity indices, spatial diversity indices, rank abundance curves, and community stability measures. The diversity indices are temporal and spatial analogs to traditional diversity indices. Specifically, the package includes functions to calculate community richness, evenness and diversity at a given point in space and time. In addition, it contains functions to calculate species turnover, mean rank shifts, and lags in community similarity between two time points. Details of the methods are available in Hallett et al. (2016) and Avolio et al. (2019) .
How to cite:
Matthew B. Jones (2015). codyn: Community Dynamics Metrics. R package version 2.0.6, https://cran.r-project.org/web/packages/codyn. Accessed 29 Oct. 2026.
Previous versions and publish date:
(2026-09-18 06:00), 1.0.0 (2015-10-20 08:06), 1.0.1 (2016-01-15 10:28), 1.1.0 (2016-04-27 13:30), 2.0.0 (2018-06-12 07:29), 2.0.1 (2019-03-08 22:02), 2.0.2 (2019-04-09 07:02), 2.0.3 (2019-09-17 20:50), 2.0.4 (2020-05-06 15:00), 2.0.5 (2020-12-01 08:40)
Other packages that cited codyn R package
View codyn citation profile
Other R packages that codyn depends, imports, suggests or enhances
Complete documentation for codyn
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

personalized2part  
Two-Part Estimation of Treatment Rules for Semi-Continuous Data
Implements the methodology of Huling, Smith, and Chen (2020) , w ...
Download / Learn more Package Citations See dependency  
fastRG  
Sample Generalized Random Dot Product Graphs in Linear Time
Samples generalized random product graphs, a generalization of a broad class of network models. Giv ...
Download / Learn more Package Citations See dependency  
binovisualfields  
Depth-Dependent Binocular Visual Fields Simulation
Simulation and visualization depth-dependent integrated visual fields. Visual fields are measured mo ...
Download / Learn more Package Citations See dependency  
GEVcdn  
GEV Conditional Density Estimation Network
Implements a flexible nonlinear modelling framework for nonstationary generalized extreme value anal ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA