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coalescentMCMC  

MCMC Algorithms for the Coalescent
View on CRAN: Click here


Download and install coalescentMCMC package within the R console
Install from CRAN:
install.packages("coalescentMCMC")

Install from Github:
library("remotes")
install_github("cran/coalescentMCMC")

Install by package version:
library("remotes")
install_version("coalescentMCMC", "0.5")



Attach the package and use:
library("coalescentMCMC")
Maintained by
Emmanuel Paradis
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-10-08
Latest Update: 2022-04-22
Description:
Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters. Extended description can be found in Paradis (2020) . For details on the MCMC algorithm, see Kuhner et al. (1995) and Drummond et al. (2002) .
How to cite:
Emmanuel Paradis (2012). coalescentMCMC: MCMC Algorithms for the Coalescent. R package version 0.5, https://cran.r-project.org/web/packages/coalescentMCMC. Accessed 02 Nov. 2026.
Previous versions and publish date:
(2026-07-23 12:10), 0.1 (2012-10-08 16:13), 0.2 (2013-07-19 16:23), 0.3 (2013-10-27 07:08), 0.4-1 (2015-03-03 22:37), 0.4-4 (2022-04-22 11:30), 0.4 (2013-12-04 09:41)
Other packages that cited coalescentMCMC R package
View coalescentMCMC citation profile
Other R packages that coalescentMCMC depends, imports, suggests or enhances
Complete documentation for coalescentMCMC
Functions, R codes and Examples using the coalescentMCMC R package
Some associated functions: coalesceMCMC . dcoal . getMCMCtrees . plotTHETA . proba.coalescent . sim.coalescent . subset.coalescentMCMC . treeOperators . 
Some associated R codes: coalescentMCMC.R . dcoal.R . plotTHETA.R . sim.coalescent.R . treeOperators.R . zzz.R .  Full coalescentMCMC package functions and examples
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