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coalescentMCMC
View on CRAN: Click
here
Download and install coalescentMCMC package within the R console
Install from CRAN:
install.packages("coalescentMCMC")
Install from Github:
library("remotes")
install_github("cran/coalescentMCMC") Install by package version:
library("remotes")
install_version("coalescentMCMC", "0.4-4") Attach the package and use:
library("coalescentMCMC")
Maintained by
Emmanuel Paradis
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-10-08
Latest Update: 2022-04-22
Description:
Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters. Extended description can be found in Paradis (2020) . For details on the MCMC algorithm, see Kuhner et al. (1995) and Drummond et al. (2002) .
How to cite:
Emmanuel Paradis (2012). coalescentMCMC: MCMC Algorithms for the Coalescent. R package version 0.4-4, https://cran.r-project.org/web/packages/coalescentMCMC. Accessed 22 Jul. 2026.
Previous versions and publish date:
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Complete documentation for coalescentMCMC
Functions, R codes and Examples using
the coalescentMCMC R package
Some associated functions: coalesceMCMC . dcoal . getMCMCtrees . plotTHETA . proba.coalescent . sim.coalescent . subset.coalescentMCMC . treeOperators .
Some associated R codes: coalescentMCMC.R . dcoal.R . plotTHETA.R . sim.coalescent.R . treeOperators.R . zzz.R . Full coalescentMCMC package functions and examples
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