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clustra  

Clustering Longitudinal Trajectories
View on CRAN: Click here


Download and install clustra package within the R console
Install from CRAN:
install.packages("clustra")

Install from Github:
library("remotes")
install_github("cran/clustra")

Install by package version:
library("remotes")
install_version("clustra", "0.2.1")



Attach the package and use:
library("clustra")
Maintained by
George Ostrouchov
[Scholar Profile | Author Map]
First Published: 2021-11-22
Latest Update: 2024-01-10
Description:
Clusters longitudinal trajectories over time (can be unequally spaced, unequal length time series and/or partially overlapping series) on a common time axis. Performs k-means clustering on a single continuous variable measured over time, where each mean is defined by a thin plate spline fit to all points in a cluster. Distance is MSE across trajectory points to cluster spline. Provides graphs of derived cluster splines, silhouette plots, and Adjusted Rand Index evaluations of the number of clusters. Scales well to large data with multicore parallelism available to speed computation.
How to cite:
George Ostrouchov (2021). clustra: Clustering Longitudinal Trajectories. R package version 0.2.1, https://cran.r-project.org/web/packages/clustra. Accessed 13 Apr. 2025.
Previous versions and publish date:
0.1.5 (2021-11-22 10:00), 0.1.6 (2022-01-16 07:42), 0.2.0 (2023-10-14 06:50)
Other packages that cited clustra R package
View clustra citation profile
Other R packages that clustra depends, imports, suggests or enhances
Complete documentation for clustra
Functions, R codes and Examples using the clustra R package
Some associated functions: allpair_RandIndex . bp10k . check_df . clustra-package . clustra . clustra_rand . clustra_sil . deltime . gen_traj_data . gendata . ic_fun . kchoose . mse_g . oneid . plot_sample . plot_silhouette . plot_smooths . pred_g . rand_plot . start_groups . tps_g . traj_rep . trajectories . xit_report . 
Some associated R codes: clustra-package.R . data.R . evaluate.R . generate.R . graphics.R . trajectories.R .  Full clustra package functions and examples
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