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clusterhap  

Clustering Genotypes in Haplotypes
View on CRAN: Click here


Download and install clusterhap package within the R console
Install from CRAN:
install.packages("clusterhap")

Install from Github:
library("remotes")
install_github("cran/clusterhap")

Install by package version:
library("remotes")
install_version("clusterhap", "0.1")



Attach the package and use:
library("clusterhap")
Maintained by
Gaston Quero
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-05-16
Latest Update: 2016-05-16
Description:
One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies.
How to cite:
Gaston Quero (2016). clusterhap: Clustering Genotypes in Haplotypes. R package version 0.1, https://cran.r-project.org/web/packages/clusterhap. Accessed 03 Dec. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited clusterhap R package
View clusterhap citation profile
Other R packages that clusterhap depends, imports, suggests or enhances
Complete documentation for clusterhap
Functions, R codes and Examples using the clusterhap R package
Some associated functions: clusterhap . rice_qtl . sim_qtl . 
Some associated R codes: clusterhap.R . rice_qtl.R . sim_qtl.R .  Full clusterhap package functions and examples
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