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cloneRate  

Estimate Growth Rates from Phylogenetic Trees
View on CRAN: Click here


Download and install cloneRate package within the R console
Install from CRAN:
install.packages("cloneRate")

Install from Github:
library("remotes")
install_github("cran/cloneRate")

Install by package version:
library("remotes")
install_version("cloneRate", "0.2.3")



Attach the package and use:
library("cloneRate")
Maintained by
Brian Johnson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-09-22
Latest Update: 2023-09-22
Description:
Quickly estimate the net growth rate of a population or clone whose growth can be approximated by a birth-death branching process. Input should be phylogenetic tree(s) of clone(s) with edge lengths corresponding to either time or mutations. Based on coalescent results in Johnson et al. (2023) . Simulation techniques as well as growth rate methods build on prior work from Lambert A. (2018) and Stadler T. (2009) .
How to cite:
Brian Johnson (2023). cloneRate: Estimate Growth Rates from Phylogenetic Trees. R package version 0.2.3, https://cran.r-project.org/web/packages/cloneRate. Accessed 13 Jun. 2026.
Previous versions and publish date:
No previous versions
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Complete documentation for cloneRate
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