Other packages > Find by keyword >

cloneRate  

Estimate Growth Rates from Phylogenetic Trees
View on CRAN: Click here


Download and install cloneRate package within the R console
Install from CRAN:
install.packages("cloneRate")

Install from Github:
library("remotes")
install_github("cran/cloneRate")

Install by package version:
library("remotes")
install_version("cloneRate", "0.2.3")



Attach the package and use:
library("cloneRate")
Maintained by
Brian Johnson
[Scholar Profile | Author Map]
First Published: 2023-09-22
Latest Update: 2023-09-22
Description:
Quickly estimate the net growth rate of a population or clone whose growth can be approximated by a birth-death branching process. Input should be phylogenetic tree(s) of clone(s) with edge lengths corresponding to either time or mutations. Based on coalescent results in Johnson et al. (2023) . Simulation techniques as well as growth rate methods build on prior work from Lambert A. (2018) and Stadler T. (2009) .
How to cite:
Brian Johnson (2023). cloneRate: Estimate Growth Rates from Phylogenetic Trees. R package version 0.2.3, https://cran.r-project.org/web/packages/cloneRate. Accessed 13 Apr. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited cloneRate R package
View cloneRate citation profile
Other R packages that cloneRate depends, imports, suggests or enhances
Complete documentation for cloneRate
Downloads during the last 30 days
03/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0304/0404/0504/0604/0704/0804/0904/1004/11Downloads for cloneRate2468101214TrendBars

Today's Hot Picks in Authors and Packages

LDABiplots  
Biplot Graphical Interface for LDA Models
Contains the development of a tool that provides a web-based graphical user interface (GUI) to perf ...
Download / Learn more Package Citations See dependency  
ggprism  
A 'ggplot2' Extension Inspired by 'GraphPad Prism'
Provides various themes, palettes, and other functions that are used to customise ggplots to look l ...
Download / Learn more Package Citations See dependency  
optimParallel  
Parallel Version of the L-BFGS-B Optimization Method
Provides a parallel version of the L-BFGS-B method of optim(). The main function of the package is o ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
SPOTMisc  
Misc Extensions for the "SPOT" Package
Implements additional models, simulation tools, and interfaces as extensions to 'SPOT'. It provides ...
Download / Learn more Package Citations See dependency  
COMPoissonReg  
Conway-Maxwell Poisson (COM-Poisson) Regression
Fit Conway-Maxwell Poisson (COM-Poisson or CMP) regression models to count data (Sellers & Shmueli, ...
Download / Learn more Package Citations See dependency  

24,012

R Packages

207,311

Dependencies

64,867

Author Associations

24,013

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA