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clockSim  

Streamlined Simulation of Circadian Gene Networks
View on CRAN: Click here


Download and install clockSim package within the R console
Install from CRAN:
install.packages("clockSim")

Install from Github:
library("remotes")
install_github("cran/clockSim")

Install by package version:
library("remotes")
install_version("clockSim", "0.1.2")



Attach the package and use:
library("clockSim")
Maintained by
Ye Yuan
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-04-22
Latest Update: 2025-04-22
Description:
A user-friendly workflow for simulating circadian clock gene networks. Despite decades of advances in modeling circadian clock dynamics, the lack of accessible tools for reproducible simulation workflows hinders the integration of computational modeling with experimental studies. 'clockSim' addresses this gap by providing models and helper functions with step-by-step vignettes. This package opens up system-level exploration of the circadian clock to wet-lab experimentalists, and future development will include additional clock architectures and other gene circuit models. Currently implemented models are based on Leloup and Goldbeter (1998) <doi:10.1177/074873098128999934>.
How to cite:
Ye Yuan (2025). clockSim: Streamlined Simulation of Circadian Gene Networks. R package version 0.1.2, https://cran.r-project.org/web/packages/clockSim. Accessed 21 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:26), 0.1.1 (2025-04-07 18:20), 0.1.2 (2025-04-22 22:10)
Other packages that cited clockSim R package
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Complete documentation for clockSim
Functions, R codes and Examples using the clockSim R package
Full clockSim package functions and examples
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