Other packages > Find by keyword >

clockSim  

Streamlined Simulation of Circadian Gene Networks
View on CRAN: Click here


Download and install clockSim package within the R console
Install from CRAN:
install.packages("clockSim")

Install from Github:
library("remotes")
install_github("cran/clockSim")

Install by package version:
library("remotes")
install_version("clockSim", "0.1.2")



Attach the package and use:
library("clockSim")
Maintained by
Ye Yuan
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-04-22
Latest Update: 2025-04-22
Description:
A user-friendly workflow for simulating circadian clock gene networks. Despite decades of advances in modeling circadian clock dynamics, the lack of accessible tools for reproducible simulation workflows hinders the integration of computational modeling with experimental studies. 'clockSim' addresses this gap by providing models and helper functions with step-by-step vignettes. This package opens up system-level exploration of the circadian clock to wet-lab experimentalists, and future development will include additional clock architectures and other gene circuit models. Currently implemented models are based on Leloup and Goldbeter (1998) <doi:10.1177/074873098128999934>.
How to cite:
Ye Yuan (2025). clockSim: Streamlined Simulation of Circadian Gene Networks. R package version 0.1.2, https://cran.r-project.org/web/packages/clockSim. Accessed 03 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:26), 0.1.1 (2025-04-07 18:20), 0.1.2 (2025-04-22 22:10)
Other packages that cited clockSim R package
View clockSim citation profile
Other R packages that clockSim depends, imports, suggests or enhances
Complete documentation for clockSim
Functions, R codes and Examples using the clockSim R package
Full clockSim package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
mxmmod  
Measurement Model of Derivatives in 'OpenMx'
Provides a convenient interface in 'OpenMx' for building Estabrook's (2015) ...
Download / Learn more Package Citations See dependency  
cccrm  
Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures
Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are ...
Download / Learn more Package Citations See dependency  
sudokuAlt  
Tools for Making and Spoiling Sudoku Games
Tools for making, retrieving, displaying and solving sudoku games. This package is an alternative to ...
Download / Learn more Package Citations See dependency  
WA  
While-Alive Loss Rate for Recurrent Event in the Presence of Death
Contains inferential and graphical routines for multi-group analysis of while-alive loss (or event) ...
Download / Learn more Package Citations See dependency  
Maintainer: Lu Mao (view profile)

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,834

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA