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clinDataReview  

Clinical Data Review Tool
View on CRAN: Click here


Download and install clinDataReview package within the R console
Install from CRAN:
install.packages("clinDataReview")

Install from Github:
library("remotes")
install_github("cran/clinDataReview")

Install by package version:
library("remotes")
install_version("clinDataReview", "1.6.1")



Attach the package and use:
library("clinDataReview")
Maintained by
Laure Cougnaud
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-30
Latest Update: 2023-12-11
Description:
Creation of interactive tables, listings and figures ('TLFs') and associated report for exploratory analysis of data in a clinical trial, e.g. for clinical oversight activities. Interactive figures include sunburst, treemap, scatterplot, line plot and barplot of counts data. Interactive tables include table of summary statistics (as counts of adverse events, enrollment table) and listings. Possibility to compare data (summary table or listing) across two data batches/sets. A clinical data review report is created via study-specific configuration files and template 'R Markdown' reports contained in the package.
How to cite:
Laure Cougnaud (2021). clinDataReview: Clinical Data Review Tool. R package version 1.6.1, https://cran.r-project.org/web/packages/clinDataReview. Accessed 31 Jan. 2025.
Previous versions and publish date:
1.0.0 (2021-06-30 12:50), 1.1.0 (2021-07-14 14:30), 1.2.0 (2021-10-01 19:10), 1.2.1 (2021-10-02 15:30), 1.2.2 (2022-02-23 20:10), 1.3.1 (2022-10-10 20:50), 1.4.0 (2023-02-24 15:30), 1.5.0 (2023-12-11 09:30), 1.5.1 (2024-04-24 22:10), 1.5.2 (2024-05-17 18:30), 1.6.0 (2024-06-13 17:00)
Other packages that cited clinDataReview R package
View clinDataReview citation profile
Other R packages that clinDataReview depends, imports, suggests or enhances
Complete documentation for clinDataReview
Functions, R codes and Examples using the clinDataReview R package
Some associated functions: JSONSchToRd . addDateOfReportRun . addFacetPanel . addLayerToScatterPlot . addReferenceLinesClinDataPlot . addSelectBtn . annotateData . barplotClinData . boxplotClinData . buildBook . checkAvailabilityMetadata . checkChapterParallel . checkConfigFile . checkReportTitles . checkTemplatesName . checkValueType . clinDataReview-common-args-report . clinDataReview-common-args-summaryStatsVis . clinDataReview-common-args . clinDataReview-templates . collapseHtmlContent . combineButtonsAndPlot . convertMdToHtml . convertReportToAspx . countNLines . createClinDataReviewReportSkeleton . createExampleMetadata . createMainConfigSkeleton . createOutputYaml . createPatientProfileVar . createRedirectPage . createTemplateDoc . errorbarClinData . exportSessionInfoToMd . filterData . filterDataSingle . forceParams . formatDataForPlotClinData . formatHoverText . formatPathDateInfoMetadata . formatPlotlyClinData . formatToHierarchicalData . getAxisLabs . getAxisLimPlot . getDataReferenceLines . getDimGgplot . getExtraDirs . getFacetVars . getFctCode . getFctTypeReferenceLines . getHTMLToc . getHeightLab . getIndexHTMLTitle . getInterimResFile . getJitterVar . getJsDepClinDataReview . getMdFromConfig . getMdHeader . getMetadata . getParFctReferenceLines . getParamsFromConfig . getPathHyperlink . getPathTemplate . getPlotTableVars . getPositionAndMargins . getSizePlot . getTocNumbering . gitbook_clinDataReview_report . html_clinDataReview_report . knitPrintClinDataReview . knit_print.clinDataReview . knit_print.clinDataReviewMetadata . layoutClinData . merge.sessionInfo . moveSkeletonFiles . moveXpt . plotCountClinData . postProcessReport . print.clinDataReview . processData . renamePathDateInfoMetadata . renderChapter . renderFile . render_clinDataReviewReport . scatterplotClinData . setFacetLayoutWrap . setPaletteStaticScatterplotClinData . splitChapter . staticScatterplotClinData . sunburstClinData . tableClinData . timeProfileIntervalPlot . transformData . treemapClinData . varToFm . zipClinDataReview . 
Some associated R codes: dataManipulation-annotateData.R . dataManipulation-filterData.R . dataManipulation-processData.R . dataManipulation-transformData.R . dataManipulation-utility.R . doc-clinDataReview-common-args-summaryStatsVis.R . doc-clinDataReview-common-args.R . init.R . miscellaneous.R . plots-barplotClinData.R . plots-boxplotClinData.R . plots-countClinData.R . plots-errorbarClinData.R . plots-scatterplotClinData.R . plots-staticScatterplotClinData.R . plots-sunburstClinData.R . plots-tableClinData.R . plots-timeProfileIntervalPlot.R . plots-treemapClinData.R . plots-utility-axes.R . plots-utility-axisLabels.R . plots-utility-checkValueType.R . plots-utility-dimensions.R . plots-utility-formatDataForPlotClinData.R . plots-utility-formatPlotlyClinData.R . plots-utility-formatToHierarchicalData.R . plots-utility-getPlotTableVars.R . plots-utility-layout.R . plots-utility-referenceLines.R . reporting-convertHtmlToAspx.R . reporting-formats.R . reporting-metadata.R . reporting-render-general.R . reporting-render-html.R . reporting-render-md.R . reporting-render-params.R . reporting-render-sessionInfo.R . reporting-render-utility.R . reporting-skeleton.R . reporting-templates.R . reporting-utility.R . reporting-zipClinDataReviewReport.R .  Full clinDataReview package functions and examples
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