R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
cladoRcpp
View on CRAN: Click
here
Download and install cladoRcpp package within the R console
Install from CRAN:
install.packages("cladoRcpp")
Install from Github:
library("remotes")
install_github("cran/cladoRcpp") Install by package version:
library("remotes")
install_version("cladoRcpp", "0.15.1") Attach the package and use:
library("cladoRcpp")
Maintained by
Nicholas J. Matzke
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-04-04
Latest Update: 2018-11-21
Description:
Various cladogenesis-related calculations that are slow in pure R are implemented in C++ with Rcpp. These include the calculation of the probability of various scenarios for the inheritance of geographic range at the divergence events on a phylogenetic tree, and other calculations necessary for models which are not continuous-time markov chains (CTMC), but where change instead occurs instantaneously at speciation events. Typically these models must assess the probability of every possible combination of (ancestor state, left descendent state, right descendent state). This means that there are up to (# of states)^3 combinations to investigate, and in biogeographical models, there can easily be hundreds of states, so calculation time becomes an issue. C++ implementation plus clever tricks (many combinations can be eliminated a priori) can greatly speed the computation time over naive R implementations. CITATION INFO: This package is the result of my Ph.D. research, please cite the package if you use it! Type: citation(package="cladoRcpp") to get the citation information.
How to cite:
Nicholas J. Matzke (2013). cladoRcpp: C++ Implementations of Phylogenetic Cladogenesis Calculations. R package version 0.15.1, https://cran.r-project.org/web/packages/cladoRcpp. Accessed 04 Jun. 2026.
Previous versions and publish date:
Other packages that cited cladoRcpp R package
View cladoRcpp citation profile
Other R packages that cladoRcpp depends,
imports, suggests or enhances
Complete documentation for cladoRcpp
Functions, R codes and Examples using
the cladoRcpp R package
Some associated functions: 00-cladoRcpp-package . Rcpp_combn_zerostart . areas_list_to_states_list_old . numstates_from_numareas . rcpp_areas_list_to_states_list . rcpp_calc_anclikes_sp . rcpp_calc_anclikes_sp_COOprobs . rcpp_calc_anclikes_sp_COOweights_faster . rcpp_calc_anclikes_sp_prebyte . rcpp_calc_anclikes_sp_rowsums . rcpp_calc_anclikes_sp_using_COOprobs . rcpp_calc_rowsums_for_COOweights_columnar . rcpp_calc_splitlikes_using_COOweights_columnar . rcpp_convolve . rcpp_mult2probvect . rcpp_states_list_to_DEmat . strsplit3 .
Some associated R codes: cladoRcpp-package.R . cladoRcpp.R . Full cladoRcpp package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
shinybusy
Add indicators (spinner, progress bar, gif) in your 'shiny'
applications to show the user that the ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Victor Perrier (view profile)
crplyr
In order to facilitate analysis of datasets hosted on the Crunch
data platform ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Greg Freedman Ellis (view profile)
phers
Use phenotype risk scores based on linked clinical and genetic data
to study Mendelian disease and ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jake Hughey (view profile)
golem
An opinionated framework for building a production-ready
'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Colin Fay (view profile)
murphydiagram
Data and code for the paper by Ehm, Gneiting, Jordan and
Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Fabian Krueger (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
27,268
R Packages
233,548
Dependencies
72,590
Author Associations
27,205
Publication Badges
