Other packages > Find by keyword >

cladoRcpp  

C++ Implementations of Phylogenetic Cladogenesis Calculations
View on CRAN: Click here


Download and install cladoRcpp package within the R console
Install from CRAN:
install.packages("cladoRcpp")

Install from Github:
library("remotes")
install_github("cran/cladoRcpp")

Install by package version:
library("remotes")
install_version("cladoRcpp", "0.15.1")



Attach the package and use:
library("cladoRcpp")
Maintained by
Nicholas J. Matzke
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-04-04
Latest Update: 2018-11-21
Description:
Various cladogenesis-related calculations that are slow in pure R are implemented in C++ with Rcpp. These include the calculation of the probability of various scenarios for the inheritance of geographic range at the divergence events on a phylogenetic tree, and other calculations necessary for models which are not continuous-time markov chains (CTMC), but where change instead occurs instantaneously at speciation events. Typically these models must assess the probability of every possible combination of (ancestor state, left descendent state, right descendent state). This means that there are up to (# of states)^3 combinations to investigate, and in biogeographical models, there can easily be hundreds of states, so calculation time becomes an issue. C++ implementation plus clever tricks (many combinations can be eliminated a priori) can greatly speed the computation time over naive R implementations. CITATION INFO: This package is the result of my Ph.D. research, please cite the package if you use it! Type: citation(package="cladoRcpp") to get the citation information.
How to cite:
Nicholas J. Matzke (2013). cladoRcpp: C++ Implementations of Phylogenetic Cladogenesis Calculations. R package version 0.15.1, https://cran.r-project.org/web/packages/cladoRcpp. Accessed 06 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:26), 0.1 (2013-04-04 07:31), 0.11 (2013-04-11 12:19), 0.14.2 (2013-07-15 07:30), 0.14.4 (2014-05-18 07:22), 0.14 (2013-06-23 00:18), 0.15 (2018-10-09 01:20)
Other packages that cited cladoRcpp R package
View cladoRcpp citation profile
Other R packages that cladoRcpp depends, imports, suggests or enhances
Complete documentation for cladoRcpp
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gRim  
Graphical Interaction Models
Provides the following types of models: Models for contingency tables (i.e. log-linear models) Grap ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
gecko  
Geographical Ecology and Conservation Knowledge Online
Includes a collection of geographical analysis functions aimed primarily at ecology and conservation ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA