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circlize
View on CRAN: Click
here
Download and install circlize package within the R console
Install from CRAN:
install.packages("circlize")
Install from Github:
library("remotes")
install_github("cran/circlize")
Install by package version:
library("remotes")
install_version("circlize", "0.4.16")
Attach the package and use:
library("circlize")
Maintained by
Zuguang Gu
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-05-26
Latest Update: 2022-05-10
Description:
Circular layout is an efficient way for the visualization of huge
amounts of information. Here this package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of the package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
it gives users more convenience and freedom to design figures for
better understanding complex patterns behind multiple dimensional data.
The package is described in Gu et al. 2014 .
How to cite:
Zuguang Gu (2013). circlize: Circular Visualization. R package version 0.4.16, https://cran.r-project.org/web/packages/circlize. Accessed 18 Feb. 2025.
Previous versions and publish date:
0.0.2 (2013-05-26 14:46), 0.0.3 (2013-06-02 23:05), 0.0.4 (2013-07-05 20:28), 0.0.5 (2013-08-03 16:58), 0.0.6 (2013-09-02 00:23), 0.0.7 (2013-10-01 23:10), 0.0.8 (2014-06-03 13:36), 0.0.9 (2014-07-11 23:51), 0.1.0 (2014-08-02 23:44), 0.1.1 (2014-09-01 20:44), 0.1.2 (2014-10-13 08:05), 0.1.3 (2014-11-07 00:28), 0.2.0 (2014-12-08 22:24), 0.2.1 (2015-01-09 00:19), 0.2.2 (2015-01-30 07:56), 0.2.3 (2015-02-22 17:33), 0.2.4 (2015-03-20 14:22), 0.2.5 (2015-07-08 09:53), 0.3.0 (2015-08-01 20:34), 0.3.1 (2015-08-19 00:43), 0.3.2 (2015-10-21 10:01), 0.3.3 (2015-11-26 08:33), 0.3.4 (2015-12-22 14:36), 0.3.5 (2016-03-28 23:18), 0.3.6 (2016-04-23 15:35), 0.3.7 (2016-05-15 21:50), 0.3.8 (2016-08-14 15:28), 0.3.9 (2016-09-26 23:38), 0.3.10 (2017-03-07 13:41), 0.4.0 (2017-05-29 13:55), 0.4.1 (2017-07-19 23:48), 0.4.2 (2017-11-18 23:49), 0.4.3 (2017-12-20 17:14), 0.4.4 (2018-06-10 19:35), 0.4.5 (2018-11-21 22:40), 0.4.6 (2019-04-03 20:00), 0.4.7 (2019-08-21 20:10), 0.4.8 (2019-09-08 12:00), 0.4.9 (2020-05-01 00:00), 0.4.10 (2020-06-15 02:00), 0.4.11 (2020-10-31 08:00), 0.4.12 (2021-01-08 16:20), 0.4.13 (2021-06-09 23:40), 0.4.14 (2022-02-11 11:50), 0.4.15 (2022-05-10 21:30)
Other packages that cited circlize R package
View circlize citation profile
Other R packages that circlize depends,
imports, suggests or enhances
Complete documentation for circlize
Functions, R codes and Examples using
the circlize R package
Some associated functions: CELL_META . Subset.CELL_META . add_transparency . adjacencyList2Matrix . adjacencyMatrix2List . arrange_links_evenly . calc_gap . chordDiagram . chordDiagramFromDataFrame . chordDiagramFromMatrix . circlize-package . circlize . circos.arrow . circos.axis . circos.barplot . circos.boxplot . circos.clear . circos.connect . circos.dendrogram . circos.genomicAxis . circos.genomicDensity . circos.genomicHeatmap . circos.genomicIdeogram . circos.genomicInitialize . circos.genomicLabels . circos.genomicLines . circos.genomicLink . circos.genomicPoints . circos.genomicPosTransformLines . circos.genomicRainfall . circos.genomicRect . circos.genomicText . circos.genomicTrack . circos.genomicTrackPlotRegion . circos.heatmap.initialize . circos.heatmap.link . circos.heatmap . circos.info . circos.initialize . circos.initializeCircularGenome . circos.initializeWithIdeogram . circos.labels . circos.lines . circos.link . circos.nested . circos.par . circos.points . circos.polygon . circos.raster . circos.rect . circos.segments . circos.text . circos.track . circos.trackHist . circos.trackLines . circos.trackPlotRegion . circos.trackPoints . circos.trackText . circos.triangle . circos.update . circos.updatePlotRegion . circos.violin . circos.xaxis . circos.yaxis . cm_h . cm_x . cm_y . col2value . colorRamp2 . convert_height . convert_length . convert_x . convert_y . cytoband.col . degree . draw.sector . fontsize . generateRandomBed . genomicDensity . get.all.sector.index . get.all.track.index . get.cell.meta.data . get.current.chromosome . get.current.sector.index . get.current.track.index . getI . get_most_inside_radius . highlight.chromosome . highlight.sector . inch_h . inch_x . inch_y . inches_h . inches_x . inches_y . mm_h . mm_x . mm_y . names.CELL_META . posTransform.default . posTransform.text . print.CELL_META . rainfallTransform . rand_color . read.chromInfo . read.cytoband . reverse.circlize . set.current.cell . set_track_gap . show.index . smartAlign . uh . ux . uy .
Some associated R codes: chordDiagram.R . circos.arrow.R . circos.heatmap.R . circos.nested.R . genomic.R . genomic_utils.R . global.R . link.R . low_level.R . overview.R . plot.R . random_color.R . raster.R . regions.R . utils.R . zzz.R . Full circlize package functions and examples
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