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circlize  

Circular Visualization
View on CRAN: Click here


Download and install circlize package within the R console
Install from CRAN:
install.packages("circlize")

Install from Github:
library("remotes")
install_github("cran/circlize")

Install by package version:
library("remotes")
install_version("circlize", "0.4.16")



Attach the package and use:
library("circlize")
Maintained by
Zuguang Gu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-05-26
Latest Update: 2022-05-10
Description:
Circular layout is an efficient way for the visualization of huge amounts of information. Here this package provides an implementation of circular layout generation in R as well as an enhancement of available software. The flexibility of the package is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily implemented by users for specific purposes. Together with the seamless connection between the powerful computational and visual environment in R, it gives users more convenience and freedom to design figures for better understanding complex patterns behind multiple dimensional data. The package is described in Gu et al. 2014 .
How to cite:
Zuguang Gu (2013). circlize: Circular Visualization. R package version 0.4.16, https://cran.r-project.org/web/packages/circlize. Accessed 18 Feb. 2025.
Previous versions and publish date:
0.0.2 (2013-05-26 14:46), 0.0.3 (2013-06-02 23:05), 0.0.4 (2013-07-05 20:28), 0.0.5 (2013-08-03 16:58), 0.0.6 (2013-09-02 00:23), 0.0.7 (2013-10-01 23:10), 0.0.8 (2014-06-03 13:36), 0.0.9 (2014-07-11 23:51), 0.1.0 (2014-08-02 23:44), 0.1.1 (2014-09-01 20:44), 0.1.2 (2014-10-13 08:05), 0.1.3 (2014-11-07 00:28), 0.2.0 (2014-12-08 22:24), 0.2.1 (2015-01-09 00:19), 0.2.2 (2015-01-30 07:56), 0.2.3 (2015-02-22 17:33), 0.2.4 (2015-03-20 14:22), 0.2.5 (2015-07-08 09:53), 0.3.0 (2015-08-01 20:34), 0.3.1 (2015-08-19 00:43), 0.3.2 (2015-10-21 10:01), 0.3.3 (2015-11-26 08:33), 0.3.4 (2015-12-22 14:36), 0.3.5 (2016-03-28 23:18), 0.3.6 (2016-04-23 15:35), 0.3.7 (2016-05-15 21:50), 0.3.8 (2016-08-14 15:28), 0.3.9 (2016-09-26 23:38), 0.3.10 (2017-03-07 13:41), 0.4.0 (2017-05-29 13:55), 0.4.1 (2017-07-19 23:48), 0.4.2 (2017-11-18 23:49), 0.4.3 (2017-12-20 17:14), 0.4.4 (2018-06-10 19:35), 0.4.5 (2018-11-21 22:40), 0.4.6 (2019-04-03 20:00), 0.4.7 (2019-08-21 20:10), 0.4.8 (2019-09-08 12:00), 0.4.9 (2020-05-01 00:00), 0.4.10 (2020-06-15 02:00), 0.4.11 (2020-10-31 08:00), 0.4.12 (2021-01-08 16:20), 0.4.13 (2021-06-09 23:40), 0.4.14 (2022-02-11 11:50), 0.4.15 (2022-05-10 21:30)
Other packages that cited circlize R package
View circlize citation profile
Other R packages that circlize depends, imports, suggests or enhances
Complete documentation for circlize
Functions, R codes and Examples using the circlize R package
Some associated functions: CELL_META . Subset.CELL_META . add_transparency . adjacencyList2Matrix . adjacencyMatrix2List . arrange_links_evenly . calc_gap . chordDiagram . chordDiagramFromDataFrame . chordDiagramFromMatrix . circlize-package . circlize . circos.arrow . circos.axis . circos.barplot . circos.boxplot . circos.clear . circos.connect . circos.dendrogram . circos.genomicAxis . circos.genomicDensity . circos.genomicHeatmap . circos.genomicIdeogram . circos.genomicInitialize . circos.genomicLabels . circos.genomicLines . circos.genomicLink . circos.genomicPoints . circos.genomicPosTransformLines . circos.genomicRainfall . circos.genomicRect . circos.genomicText . circos.genomicTrack . circos.genomicTrackPlotRegion . circos.heatmap.initialize . circos.heatmap.link . circos.heatmap . circos.info . circos.initialize . circos.initializeCircularGenome . circos.initializeWithIdeogram . circos.labels . circos.lines . circos.link . circos.nested . circos.par . circos.points . circos.polygon . circos.raster . circos.rect . circos.segments . circos.text . circos.track . circos.trackHist . circos.trackLines . circos.trackPlotRegion . circos.trackPoints . circos.trackText . circos.triangle . circos.update . circos.updatePlotRegion . circos.violin . circos.xaxis . circos.yaxis . cm_h . cm_x . cm_y . col2value . colorRamp2 . convert_height . convert_length . convert_x . convert_y . cytoband.col . degree . draw.sector . fontsize . generateRandomBed . genomicDensity . get.all.sector.index . get.all.track.index . get.cell.meta.data . get.current.chromosome . get.current.sector.index . get.current.track.index . getI . get_most_inside_radius . highlight.chromosome . highlight.sector . inch_h . inch_x . inch_y . inches_h . inches_x . inches_y . mm_h . mm_x . mm_y . names.CELL_META . posTransform.default . posTransform.text . print.CELL_META . rainfallTransform . rand_color . read.chromInfo . read.cytoband . reverse.circlize . set.current.cell . set_track_gap . show.index . smartAlign . uh . ux . uy . 
Some associated R codes: chordDiagram.R . circos.arrow.R . circos.heatmap.R . circos.nested.R . genomic.R . genomic_utils.R . global.R . link.R . low_level.R . overview.R . plot.R . random_color.R . raster.R . regions.R . utils.R . zzz.R .  Full circlize package functions and examples
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