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chromoMap  

Interactive Genomic Visualization of Biological Data
View on CRAN: Click here


Download and install chromoMap package within the R console
Install from CRAN:
install.packages("chromoMap")

Install from Github:
library("remotes")
install_github("cran/chromoMap")

Install by package version:
library("remotes")
install_version("chromoMap", "4.1.1")



Attach the package and use:
library("chromoMap")
Maintained by
Lakshay Anand
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-05-15
Latest Update: 2022-03-16
Description:
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addition to mapping elements, can visualize the data associated with chromosome elements (like gene expression) in the form of heat colors which can be highly advantageous in the scientific interpretations and research work. Because of the large size of the chromosomes, it is impractical to visualize each element on the same plot. However, the plot provides a magnified view for each of chromosome locus to render additional information and visualization specific for that location. You can map thousands of genes and can view all mappings easily. Users can investigate the detailed information about the mappings (like gene names or total genes mapped on a location) or can view the magnified single or double stranded view of the chromosome at a location showing each mapped element in sequential order. The package provide multiple features like visualizing multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and labelling. The plots can be saved as HTML documents that can be customized and shared easily. In addition, you can include them in R Markdown or in R 'Shiny' applications.
How to cite:
Lakshay Anand (2018). chromoMap: Interactive Genomic Visualization of Biological Data. R package version 4.1.1, https://cran.r-project.org/web/packages/chromoMap. Accessed 03 Dec. 2024.
Previous versions and publish date:
0.1 (2018-05-15 18:08), 0.2 (2019-04-10 21:27), 0.3.1 (2021-04-01 16:30), 0.3 (2021-01-13 12:10), 0.4.1 (2022-03-02 21:50)
Other packages that cited chromoMap R package
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Other R packages that chromoMap depends, imports, suggests or enhances
Complete documentation for chromoMap
Functions, R codes and Examples using the chromoMap R package
Some associated functions: chromoMap-shiny . chromoMap . 
Some associated R codes: chromoMap.R .  Full chromoMap package functions and examples
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