Other packages > Find by keyword >

chipPCR  

Toolkit of Helper Functions to Pre-Process Amplification Data
View on CRAN: Click here


Download and install chipPCR package within the R console
Install from CRAN:
install.packages("chipPCR")

Install from Github:
library("remotes")
install_github("cran/chipPCR")

Install by package version:
library("remotes")
install_version("chipPCR", "1.0-2")



Attach the package and use:
library("chipPCR")
Maintained by
Stefan Roediger
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-12-12
Latest Update: 2021-03-05
Description:
A collection of functions to pre-process amplification curve data from polymerase chain reaction (PCR) or isothermal amplification reactions. Contains functions to normalize and baseline amplification curves, to detect both the start and end of an amplification reaction, several smoothers (e.g., LOWESS, moving average, cubic splines, Savitzky-Golay), a function to detect false positive amplification reactions and a function to determine the amplification efficiency. Quantification point (Cq) methods include the first (FDM) and second approximate derivative maximum (SDM) methods (calculated by a 5-point-stencil) and the cycle threshold method. Data sets of experimental nucleic acid amplification systems ('VideoScan HCU', capillary convective PCR (ccPCR)) and commercial systems are included. Amplification curves were generated by helicase dependent amplification (HDA), ccPCR or PCR. As detection system intercalating dyes (EvaGreen, SYBR Green) and hydrolysis probes (TaqMan) were used. For more information see: Roediger et al. (2015) .
How to cite:
Stefan Roediger (2013). chipPCR: Toolkit of Helper Functions to Pre-Process Amplification Data. R package version 1.0-2, https://cran.r-project.org/web/packages/chipPCR. Accessed 18 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:25), 0.0.5 (2013-12-12 01:51), 0.0.6 (2014-04-24 15:23), 0.0.7 (2014-06-25 11:38), 0.0.8-1 (2014-08-26 15:39), 0.0.8-3 (2014-09-29 07:26), 0.0.8-6 (2015-02-23 00:25), 0.0.8-8 (2015-03-12 16:03), 0.0.8-10 (2015-04-10 01:11)
Other packages that cited chipPCR R package
View chipPCR citation profile
Other R packages that chipPCR depends, imports, suggests or enhances
Complete documentation for chipPCR
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

hmeasure  
The H-Measure and Other Scalar Classification Performance Metrics
Classification performance metrics that are derived from the ROC curve of a classifier. The package ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
data360r  
Wrapper for 'TCdata360' and 'Govdata360' API
Makes it easy to engage with the Application Program Interface (API) of the 'TCdata360' and 'Govdat ...
Download / Learn more Package Citations See dependency  
injectoR  
R Dependency Injection
R dependency injection framework. Dependency injection allows a program design to follow the depend ...
Download / Learn more Package Citations See dependency  
downlit  
Syntax Highlighting and Automatic Linking
Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pk ...
Download / Learn more Package Citations See dependency  
eyelinker  
Import ASC Files from EyeLink Eye Trackers
Imports plain-text ASC data files from EyeLink eye trackers into (relatively) tidy data frames for ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA