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cellpypes  

Cell Type Pipes for Single-Cell RNA Sequencing Data
View on CRAN: Click here


Download and install cellpypes package within the R console
Install from CRAN:
install.packages("cellpypes")

Install from Github:
library("remotes")
install_github("cran/cellpypes")

Install by package version:
library("remotes")
install_version("cellpypes", "0.3.0")



Attach the package and use:
library("cellpypes")
Maintained by
Felix Frauhammer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-05-19
Latest Update: 2024-01-27
Description:
Annotate single-cell RNA sequencing data manually based on marker gene thresholds. Find cell type rules (gene+threshold) through exploration, use the popular piping operator '%>%' to reconstruct complex cell type hierarchies. 'cellpypes' models technical noise to find positive and negative cells for a given expression threshold and returns cell type labels or pseudobulks. Cite this package as Frauhammer (2022) and visit for tutorials and newest features.
How to cite:
Felix Frauhammer (2022). cellpypes: Cell Type Pipes for Single-Cell RNA Sequencing Data. R package version 0.3.0, https://cran.r-project.org/web/packages/cellpypes. Accessed 06 Mar. 2026.
Previous versions and publish date:
0.1.3 (2022-05-19 09:00), 0.3.0 (2024-01-27 08:30)
Other packages that cited cellpypes R package
View cellpypes citation profile
Other R packages that cellpypes depends, imports, suggests or enhances
Complete documentation for cellpypes
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