Other packages > Find by keyword >

cellOrigins  

Finds RNASeq Source Tissues Using In Situ Hybridisation Data
View on CRAN: Click here


Download and install cellOrigins package within the R console
Install from CRAN:
install.packages("cellOrigins")

Install from Github:
library("remotes")
install_github("cran/cellOrigins")

Install by package version:
library("remotes")
install_version("cellOrigins", "0.1.3")



Attach the package and use:
library("cellOrigins")
Maintained by
David Molnar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-05
Latest Update: 2020-06-05
Description:
Finds the most likely originating tissue(s) and developmental stage(s) of tissue-specific RNA sequencing data. The package identifies both pure transcriptomes and mixtures of transcriptomes. The most likely identity is found through comparisons of the sequencing data with high-throughput in situ hybridisation patterns. Typical uses are the identification of cancer cell origins, validation of cell culture strain identities, validation of single-cell transcriptomes, and validation of identity and purity of flow-sorting and dissection sequencing products.
How to cite:
David Molnar (2020). cellOrigins: Finds RNASeq Source Tissues Using In Situ Hybridisation Data. R package version 0.1.3, https://cran.r-project.org/web/packages/cellOrigins. Accessed 22 Dec. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited cellOrigins R package
View cellOrigins citation profile
Other R packages that cellOrigins depends, imports, suggests or enhances
Complete documentation for cellOrigins
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA