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cbioportalR  

Browse and Query Clinical and Genomic Data from cBioPortal
View on CRAN: Click here


Download and install cbioportalR package within the R console
Install from CRAN:
install.packages("cbioportalR")

Install from Github:
library("remotes")
install_github("cran/cbioportalR")

Install by package version:
library("remotes")
install_version("cbioportalR", "1.1.1")



Attach the package and use:
library("cbioportalR")
Maintained by
Karissa Whiting
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-08-10
Latest Update: 2022-08-29
Description:
Provides R users with direct access to genomic and clinical data from the 'cBioPortal' web resource via user-friendly functions that wrap 'cBioPortal's' existing API endpoints . Users can browse and query genomic data on mutations, copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'), microsatellite instability status ('MSI'), 'FACETS' and select clinical data points (depending on the study). See and Gao et al., (2013) for more information on the cBioPortal web resource.
How to cite:
Karissa Whiting (2022). cbioportalR: Browse and Query Clinical and Genomic Data from cBioPortal. R package version 1.1.1, https://cran.r-project.org/web/packages/cbioportalR. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.0 (2022-08-10 14:30), 1.0.1 (2022-08-29 08:20), 1.1.0 (2023-10-05 20:50)
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