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canprot
View on CRAN: Click
here
Download and install canprot package within the R console
Install from CRAN:
install.packages("canprot")
Install from Github:
library("remotes")
install_github("cran/canprot")
Install by package version:
library("remotes")
install_version("canprot", "2.0.0")
Attach the package and use:
library("canprot")
Maintained by
Jeffrey Dick
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-06-13
Latest Update: 2022-01-17
Description:
Chemical analysis of proteins based on their amino acid
compositions. Amino acid compositions can be read from FASTA files and used to
calculate chemical metrics including carbon oxidation state and stoichiometric
hydration state, as described in Dick et al. (2020) .
Other properties that can be calculated include protein length, grand average of
hydropathy (GRAVY), isoelectric point (pI), molecular weight (MW), standard
molal volume (V0), and metabolic costs (Akashi and Gojobori, 2002
; Wagner, 2005 ;
Zhang et al., 2018 ). A database of amino acid
compositions of human proteins derived from UniProt is provided.
How to cite:
Jeffrey Dick (2017). canprot: Chemical Analysis of Proteins. R package version 2.0.0, https://cran.r-project.org/web/packages/canprot. Accessed 01 Feb. 2025.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for canprot
Functions, R codes and Examples using
the canprot R package
Some associated functions: CLES . canprot-package . check_IDs . cleanup . diffplot . get_comptab . human . metrics . mkvig . pdat_ . protcomp . qdist . xsummary .
Some associated R codes: CLES.R . check_IDs.R . cleanup.R . diffplot.R . get_comptab.R . metrics.R . mkvig.R . pdat_3D.R . pdat_breast.R . pdat_colorectal.R . pdat_glucose.R . pdat_hypoxia.R . pdat_liver.R . pdat_lung.R . pdat_multi.R . pdat_osmotic.R . pdat_osmotic_bact.R . pdat_osmotic_euk.R . pdat_osmotic_halo.R . pdat_pancreatic.R . pdat_prostate.R . pdat_secreted.R . protcomp.R . qdist.R . xsummary.R . xsummary2.R . xsummary3.R . zzz.R . Full canprot package functions and examples
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