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cancerGI  

Analyses of Cancer Gene Interaction
View on CRAN: Click here


Download and install cancerGI package within the R console
Install from CRAN:
install.packages("cancerGI")

Install from Github:
library("remotes")
install_github("cran/cancerGI")

Install by package version:
library("remotes")
install_version("cancerGI", "1.0.1")



Attach the package and use:
library("cancerGI")
Maintained by
Audrey Q. Fu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-04-01
Latest Update: 2023-09-07
Description:
Functions to perform the following analyses: i) inferring epistasis from RNAi double knockdown data; ii) identifying gene pairs of multiple mutation patterns; iii) assessing association between gene pairs and survival; and iv) calculating the smallworldness of a graph (e.g., a gene interaction network). Data and analyses are described in Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. .
How to cite:
Audrey Q. Fu (2016). cancerGI: Analyses of Cancer Gene Interaction. R package version 1.0.1, https://cran.r-project.org/web/packages/cancerGI. Accessed 01 Feb. 2025.
Previous versions and publish date:
1.0.0 (2016-04-01 16:42)
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