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campsis  

Generic PK/PD Simulation Platform CAMPSIS
View on CRAN: Click here


Download and install campsis package within the R console
Install from CRAN:
install.packages("campsis")

Install from Github:
library("remotes")
install_github("cran/campsis")

Install by package version:
library("remotes")
install_version("campsis", "1.5.5")



Attach the package and use:
library("campsis")
Maintained by
Nicolas Luyckx
[Scholar Profile | Author Map]
First Published: 2022-02-16
Latest Update: 2024-02-16
Description:
A generic, easy-to-use and intuitive pharmacokinetic/pharmacodynamic (PK/PD) simulation platform based on R packages 'rxode2', 'RxODE' and 'mrgsolve'. CAMPSIS provides an abstraction layer over the underlying processes of writing a PK/PD model, assembling a custom dataset and running a simulation. CAMPSIS has a strong dependency to the R package 'campsismod', which allows to read/write a model from/to files and adapt it further on the fly in the R environment. Package 'campsis' allows the user to assemble a dataset in an intuitive manner. Once the user
How to cite:
Nicolas Luyckx (2022). campsis: Generic PK/PD Simulation Platform CAMPSIS. R package version 1.5.5, https://cran.r-project.org/web/packages/campsis. Accessed 10 Jan. 2025.
Previous versions and publish date:
1.2.0 (2022-02-16 21:20), 1.2.1 (2022-05-03 13:30), 1.3.0 (2022-06-01 12:20), 1.4.0 (2023-04-13 11:40), 1.4.1 (2023-04-24 14:40), 1.5.0 (2023-10-13 15:40), 1.5.1 (2024-02-16 12:20), 1.5.2 (2024-04-12 11:00), 1.5.3 (2024-07-01 11:30), 1.5.4 (2024-08-30 14:20)
Other packages that cited campsis R package
View campsis citation profile
Other R packages that campsis depends, imports, suggests or enhances
Complete documentation for campsis
Functions, R codes and Examples using the campsis R package
Some associated functions: Arm . BinomialDistribution . Bolus . Bootstrap . BootstrapDistribution . ConstantDistribution . Covariate . Dataset . DatasetConfig . DatasetSummary . Declare . DiscreteDistribution . DoseAdaptation . EtaDistribution . Event . EventCovariate . EventIteration . EventRelatedObservations . Events . FixedDistribution . FunctionDistribution . Hardware . IOV . Infusion . LogNormalDistribution . NOCB . NormalDistribution . Observations . Occasion . PI . ParameterDistribution . Scenario . Scenarios . Settings . SimulationProgress . Solver . TimeVaryingCovariate . UniformDistribution . VPC . applyCompartmentCharacteristics . applyScenario . arm-class . arms-class . assignDoseNumber . bolus-class . bootstrap-class . bootstrap_distribution-class . campsis_handler . checkIIandADDL . computeIncrementalProgress . constant_distribution-class . counterBalanceLocfMode . counterBalanceNocbMode . covariate-class . covariates-class . cutTableForEvent . dataset-class . dataset_config-class . declare_settings-class . distribution-class . dose_adaptation-class . dose_adaptations-class . dosingOnly . dropOthers . event-class . event_covariate-class . events-class . exportDelegate . exportTableDelegate . factorScenarios . fillIOVOccColumns . fixed_covariate-class . fixed_distribution-class . function_distribution-class . generateIIV . generateIIV_ . getColumn . getCovariates . getDatasetMaxTime . getEventCovariates . getEventIterations . getFixedCovariates . getFurrrScheduling . getIOVs . getInitialConditions . getOccasions . getRandomSeedValue . getSeed . getSeedForDatasetExport . getSeedForIteration . getSeedForParametersSampling . getSimulationEngineType . getSplittingConfiguration . getTimeVaryingCovariates . getTimeVaryingVariables . getTimes . hardware_settings-class . importCampsismodToNamespace . infusion-class . internal_settings-class . isEmptyBootstrap . leftJoinIIV . length-arm-method . length-dataset-method . mergeTimeVaryingCovariates . mrgsolve_engine-class . nocb_settings-class . obsOnly . observations-class . observations_set-class . occasion-class . occasions-class . preprocessArmColumn . preprocessDest . preprocessDosing . preprocessEvents . preprocessFunction . preprocessIds . preprocessNocbvars . preprocessOutvars . preprocessReplicates . preprocessScenarios . preprocessSettings . preprocessSlices . preprocessTSLDAndTDOSColumn . processArmLabels . processDropOthers . processSimulateArguments . processTSLDAndTDOSColumn . protocol-class . removeInitialConditions . reorderColumns . retrieveParameterValue . rxode_engine-class . sample . sampleCovariatesList . sampleDistributionAsTibble . sampleTimeVaryingCovariates . scatterPlot . scenario-class . scenarios-class . setLabel . setSeed . setSubjects . setupPlanDefault . setupPlanSequential . shadedPlot . simulate . simulateDelegate . simulateDelegateCore . simulateScenarios . simulation_engine-class . simulation_progress-class . simulation_settings-class . solver_settings-class . spaghettiPlot . splitDataset . time_varying_covariate-class . toDatasetSummary . toExplicitDistribution . treatment-class . treatment_iov-class . treatment_iovs-class . undefined_distribution-class . uniteColumns . vpcPlot . 
Some associated R codes: arm.R . arms.R . bootstrap.R . check.R . covariate.R . covariates.R . dataset.R . dataset_config.R . dataset_summary.R . declare_settings.R . default_plot.R . distribution.R . dose_adaptation.R . dose_adaptations.R . event.R . event_logic.R . events.R . generic.R . global.R . hardware_settings.R . internal_settings.R . nocb_settings.R . observations.R . observations_set.R . occasion.R . occasions.R . parameter_uncertainty.R . plan_setup.R . protocol.R . results_processing.R . scenario.R . scenarios.R . seed.R . simulate.R . simulate_preprocess.R . simulation_engine.R . simulation_progress.R . simulation_settings.R . solver_settings.R . time_entry.R . treatment.R . treatment_entry.R . treatment_iov.R . treatment_iovs.R . utilities.R .  Full campsis package functions and examples
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