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calmate  

Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
View on CRAN: Click here


Download and install calmate package within the R console
Install from CRAN:
install.packages("calmate")

Install from Github:
library("remotes")
install_github("cran/calmate")

Install by package version:
library("remotes")
install_version("calmate", "0.13.0")



Attach the package and use:
library("calmate")
Maintained by
Henrik Bengtsson
[Scholar Profile | Author Map]
First Published: 2011-09-16
Latest Update: 2022-03-08
Description:
The CalMaTe method calibrates preprocessed allele-specific copy number estimates (ASCNs) from DNA microarrays by controlling for single-nucleotide polymorphism-specific allelic crosstalk. The resulting ASCNs are on average more accurate, which increases the power of segmentation methods for detecting changes between copy number states in tumor studies including copy neutral loss of heterozygosity. CalMaTe applies to any ASCNs regardless of preprocessing method and microarray technology, e.g. Affymetrix and Illumina.
How to cite:
Henrik Bengtsson (2011). calmate: Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation. R package version 0.13.0, https://cran.r-project.org/web/packages/calmate. Accessed 26 Mar. 2025.
Previous versions and publish date:
0.6.6 (2011-09-16 19:43), 0.7.0 (2011-10-25 09:47), 0.9.2 (2012-03-19 12:12), 0.10.0 (2013-01-08 08:30), 0.10.2 (2013-08-04 17:19), 0.11.0 (2013-10-17 12:37), 0.12.0 (2015-02-23 23:12), 0.12.1 (2015-10-27 08:09)
Other packages that cited calmate R package
View calmate citation profile
Other R packages that calmate depends, imports, suggests or enhances
Complete documentation for calmate
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