Other packages > Find by keyword >

calmate  

Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
View on CRAN: Click here


Download and install calmate package within the R console
Install from CRAN:
install.packages("calmate")

Install from Github:
library("remotes")
install_github("cran/calmate")

Install by package version:
library("remotes")
install_version("calmate", "0.13.0")



Attach the package and use:
library("calmate")
Maintained by
Henrik Bengtsson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2011-09-16
Latest Update: 2022-03-08
Description:
The CalMaTe method calibrates preprocessed allele-specific copy number estimates (ASCNs) from DNA microarrays by controlling for single-nucleotide polymorphism-specific allelic crosstalk. The resulting ASCNs are on average more accurate, which increases the power of segmentation methods for detecting changes between copy number states in tumor studies including copy neutral loss of heterozygosity. CalMaTe applies to any ASCNs regardless of preprocessing method and microarray technology, e.g. Affymetrix and Illumina.
How to cite:
Henrik Bengtsson (2011). calmate: Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation. R package version 0.13.0, https://cran.r-project.org/web/packages/calmate. Accessed 29 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:23), 0.6.6 (2011-09-16 19:43), 0.7.0 (2011-10-25 09:47), 0.9.2 (2012-03-19 12:12), 0.10.0 (2013-01-08 08:30), 0.10.2 (2013-08-04 17:19), 0.11.0 (2013-10-17 12:37), 0.12.0 (2015-02-23 23:12), 0.12.1 (2015-10-27 08:09)
Other packages that cited calmate R package
View calmate citation profile
Other R packages that calmate depends, imports, suggests or enhances
Complete documentation for calmate
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

GEVcdn  
GEV Conditional Density Estimation Network
Implements a flexible nonlinear modelling framework for nonstationary generalized extreme value anal ...
Download / Learn more Package Citations See dependency  
fastRG  
Sample Generalized Random Dot Product Graphs in Linear Time
Samples generalized random product graphs, a generalization of a broad class of network models. Giv ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
binovisualfields  
Depth-Dependent Binocular Visual Fields Simulation
Simulation and visualization depth-dependent integrated visual fields. Visual fields are measured mo ...
Download / Learn more Package Citations See dependency  
personalized2part  
Two-Part Estimation of Treatment Rules for Semi-Continuous Data
Implements the methodology of Huling, Smith, and Chen (2020) , w ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA