Other packages > Find by keyword >

calmate  

Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
View on CRAN: Click here


Download and install calmate package within the R console
Install from CRAN:
install.packages("calmate")

Install from Github:
library("remotes")
install_github("cran/calmate")

Install by package version:
library("remotes")
install_version("calmate", "0.13.0")



Attach the package and use:
library("calmate")
Maintained by
Henrik Bengtsson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2011-09-16
Latest Update: 2022-03-08
Description:
The CalMaTe method calibrates preprocessed allele-specific copy number estimates (ASCNs) from DNA microarrays by controlling for single-nucleotide polymorphism-specific allelic crosstalk. The resulting ASCNs are on average more accurate, which increases the power of segmentation methods for detecting changes between copy number states in tumor studies including copy neutral loss of heterozygosity. CalMaTe applies to any ASCNs regardless of preprocessing method and microarray technology, e.g. Affymetrix and Illumina.
How to cite:
Henrik Bengtsson (2011). calmate: Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation. R package version 0.13.0, https://cran.r-project.org/web/packages/calmate. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.6.6 (2011-09-16 19:43), 0.7.0 (2011-10-25 09:47), 0.9.2 (2012-03-19 12:12), 0.10.0 (2013-01-08 08:30), 0.10.2 (2013-08-04 17:19), 0.11.0 (2013-10-17 12:37), 0.12.0 (2015-02-23 23:12), 0.12.1 (2015-10-27 08:09)
Other packages that cited calmate R package
View calmate citation profile
Other R packages that calmate depends, imports, suggests or enhances
Complete documentation for calmate
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA