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bumblebee  

Quantify Disease Transmission Within and Between Population Groups
View on CRAN: Click here


Download and install bumblebee package within the R console
Install from CRAN:
install.packages("bumblebee")

Install from Github:
library("remotes")
install_github("cran/bumblebee")

Install by package version:
library("remotes")
install_version("bumblebee", "0.1.0")



Attach the package and use:
library("bumblebee")
Maintained by
Lerato E Magosi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-05-11
Latest Update: 2021-05-11
Description:
A simple tool to quantify the amount of transmission of an infectious disease of interest occurring within and between population groups. 'bumblebee' uses counts of observed directed transmission pairs, identified phylogenetically from deep-sequence data or from epidemiological contacts, to quantify transmission flows within and between population groups accounting for sampling heterogeneity. Population groups might include: geographical areas (e.g. communities, regions), demographic groups (e.g. age, gender) or arms of a randomized clinical trial. See the 'bumblebee' website for statistical theory, documentation and examples .
How to cite:
Lerato E Magosi (2021). bumblebee: Quantify Disease Transmission Within and Between Population Groups. R package version 0.1.0, https://cran.r-project.org/web/packages/bumblebee. Accessed 25 Jun. 2026.
Previous versions and publish date:
No previous versions
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