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bumblebee
View on CRAN: Click
here
Download and install bumblebee package within the R console
Install from CRAN:
install.packages("bumblebee")
Install from Github:
library("remotes")
install_github("cran/bumblebee")
Install by package version:
library("remotes")
install_version("bumblebee", "0.1.0")
Attach the package and use:
library("bumblebee")
Maintained by
Lerato E Magosi
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
https://magosil86.github.io/bumblebee/ . 10.32614/CRAN.package.bumblebee . https://github.com/magosil86/bumblebee/issues . https://magosil86.github.io/bumblebee/ . bumblebee citation info . bumblebee results . bumblebee.pdf . bumblebee: Estimate transmission flows within and between population groups accounting for sampling heterogeneity. . bumblebee_0.1.0.tar.gz . bumblebee_0.1.0.zip . bumblebee_0.1.0.zip . bumblebee_0.1.0.zip . bumblebee_0.1.0.tgz . bumblebee_0.1.0.tgz . bumblebee_0.1.0.tgz . bumblebee_0.1.0.tgz . bumblebee_0.1.0.tgz . bumblebee_0.1.0.tgz . https://CRAN.R-project.org/package=bumblebee .
First Published: 2021-05-11
Latest Update: 2021-05-11
Description:
A simple tool to quantify the amount of transmission
of an infectious disease of interest occurring within and between
population groups. 'bumblebee' uses counts of observed directed
transmission pairs, identified phylogenetically from deep-sequence data or
from epidemiological contacts, to quantify transmission flows within and
between population groups accounting for sampling heterogeneity. Population
groups might include: geographical areas (e.g. communities, regions),
demographic groups (e.g. age, gender) or arms of a randomized clinical
trial. See the 'bumblebee' website for statistical theory, documentation
and examples .
How to cite:
Lerato E Magosi (2021). bumblebee: Quantify Disease Transmission Within and Between Population Groups. R package version 0.1.0, https://cran.r-project.org/web/packages/bumblebee. Accessed 10 Apr. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited bumblebee R package
View bumblebee citation profile
Other R packages that bumblebee depends,
imports, suggests or enhances
Complete documentation for bumblebee
Functions, R codes and Examples using
the bumblebee R package
Some associated functions: bumblebee-package . counts_hiv_transmission_pairs . estimate_c_hat . estimate_multinom_ci . estimate_p_hat . estimate_prob_group_pairing_and_linked . estimate_theta_hat . estimate_transmission_flows_and_ci . estimated_hiv_transmission_flows . prep_p_hat . sampling_frequency .
Some associated R codes: Full bumblebee package functions and examples
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