Other packages > Find by keyword >

breakaway  

Species Richness Estimation and Modeling
View on CRAN: Click here


Download and install breakaway package within the R console
Install from CRAN:
install.packages("breakaway")

Install from Github:
library("remotes")
install_github("cran/breakaway")

Install by package version:
library("remotes")
install_version("breakaway", "4.8.4")



Attach the package and use:
library("breakaway")
Maintained by
Amy D Willis
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-08-04
Latest Update: 2022-11-22
Description:
Understanding the drivers of microbial diversity is an important frontier of microbial ecology, and investigating the diversity of samples from microbial ecosystems is a common step in any microbiome analysis. 'breakaway' is the premier package for statistical analysis of microbial diversity. 'breakaway' implements the latest and greatest estimates of species richness, described in Willis and Bunge (2015) , Willis et al. (2017) , and Willis (2016) , as well as the most commonly used estimates, including the objective Bayes approach described in Barger and Bunge (2010) .
How to cite:
Amy D Willis (2014). breakaway: Species Richness Estimation and Modeling. R package version 4.8.4, https://cran.r-project.org/web/packages/breakaway. Accessed 05 Mar. 2026.
Previous versions and publish date:
1.0 (2014-08-04 08:15), 2.0 (2015-10-02 00:14), 3.0 (2016-03-30 08:14), 4.7.8 (2022-02-11 14:00), 4.7.9 (2022-03-09 09:00), 4.8.2 (2022-10-29 11:20)
Other packages that cited breakaway R package
View breakaway citation profile
Other R packages that breakaway depends, imports, suggests or enhances
Complete documentation for breakaway
Functions, R codes and Examples using the breakaway R package
Some associated functions: F_test . alpha_estimate . alpha_estimates . apples . betta . betta_lincom . betta_pic . betta_random . breakaway . breakaway_nof1 . build_frequency_count_tables . chao1 . chao1_bc . chao_bunge . chao_shen . check_format . convert . cutoff_wrap . get_F_stat . good_turing . hawaii . kemp . make_design_matrix . make_frequency_count_table . objective_bayes_geometric . objective_bayes_mixedgeo . objective_bayes_negbin . objective_bayes_poisson . pasolli_et_al . physeq_wrap . pipe . plot.alpha_estimates . poisson_model . poisson_model_nof1 . proportions_instead . rnbinomtable . rztnbinomtable . sample_inverse_simpson . sample_richness . sample_shannon . sample_shannon_e . sample_simpson . sample_size_estimate . sample_size_figure . simulate_betta . simulate_betta_random . soil_phylo . test_submodel . toy_metadata . toy_otu_table . toy_taxonomy . true_gini . true_hill . true_inverse_simpson . true_shannon . true_shannon_e . true_simpson . wlrm_transformed . wlrm_untransformed . 
Some associated R codes: F_test.R . alpha_sample.R . alpha_true.R . bData.R . betta_lincom.R . class_alpha_estimate.R . class_alpha_estimates.R . get_F_stat.R . model_betta.R . model_betta_random.R . physeq_wrap.R . plot_alpha_estimates.R . plot_betta.R . richness_breakaway.R . richness_breakaway_nof1.R . richness_chao1.R . richness_chao1_bc.R . richness_chao_bunge.R . richness_good_turing.R . richness_kemp.R . richness_objective_bayes.R . richness_poisson.R . richness_poisson_nof1.R . richness_sample.R . richness_wlrm_t.R . richness_wlrm_ut.R . shannon_chao_shen.R . simulate_betta.R . simulate_betta_random.R . test_submodel.R . tools_breakaway.R . tools_build.R . tools_convert.R . tools_covariate_matrix.R . tools_cutoff_wrap.R . tools_sample_size.R . tools_simulate.R . utils-pipe.R .  Full breakaway package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

diffIRT  
Diffusion IRT Models for Response and Response Time Data
Package to fit diffusion-based IRT models to response and response time data. Models are fit using ...
Download / Learn more Package Citations See dependency  
imagefx  
Extract Features from Images
Synthesize images into characteristic features for time-series analysis or machine learning applicat ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
ClimClass  
Climate Classification According to Several Indices
Classification of climate according to Koeppen - Geiger, of aridity indices, of continentality indi ...
Download / Learn more Package Citations See dependency  
pinp  
'pinp' is not 'PNAS'
A 'PNAS'-alike style for 'rmarkdown', derived from the 'Proceedings of the National Academy of Scie ...
Download / Learn more Package Citations See dependency  
roccv  
ROC for Cross Validation Results
Cross validate large genetic data while specifying clinical variables that should always be in the m ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA