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branchingprocess  

Calculate Outbreak Probabilities for a Branching Process Model
View on CRAN: Click here


Download and install branchingprocess package within the R console
Install from CRAN:
install.packages("branchingprocess")

Install from Github:
library("remotes")
install_github("cran/branchingprocess")

Install by package version:
library("remotes")
install_version("branchingprocess", "0.1.0")



Attach the package and use:
library("branchingprocess")
Maintained by
Damon Toth
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-04-25
Latest Update: 2025-04-25
Description:
Quantify outbreak risk posed by individual importers of a transmissible pathogen. Input parameters of negative binomial offspring distributions for the number of transmissions from each infected individual and initial number of infected. Calculate probabilities of final outbreak size and generations of transmission, as described in Toth et al. (2015) <doi:10.3201/eid2108.150170> and Toth et al. (2016) <doi:10.1016/j.epidem.2016.04.002>.
How to cite:
Damon Toth (2025). branchingprocess: Calculate Outbreak Probabilities for a Branching Process Model. R package version 0.1.0, https://cran.r-project.org/web/packages/branchingprocess. Accessed 05 Jun. 2026.
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