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bnpsd  

Simulate Genotypes from the BN-PSD Admixture Model
View on CRAN: Click here


Download and install bnpsd package within the R console
Install from CRAN:
install.packages("bnpsd")

Install from Github:
library("remotes")
install_github("cran/bnpsd")

Install by package version:
library("remotes")
install_version("bnpsd", "1.3.13")



Attach the package and use:
library("bnpsd")
Maintained by
Alejandro Ochoa
[Scholar Profile | Author Map]
First Published: 2018-01-16
Latest Update: 2021-08-25
Description:
The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. This simulation approach is now extended to subpopulations related by a tree. Method described in Ochoa and Storey (2021) .
How to cite:
Alejandro Ochoa (2018). bnpsd: Simulate Genotypes from the BN-PSD Admixture Model. R package version 1.3.13, https://cran.r-project.org/web/packages/bnpsd. Accessed 08 Apr. 2025.
Previous versions and publish date:
1.0.1 (2018-01-16 11:07), 1.0.4 (2019-02-12 17:40), 1.1.1 (2019-05-15 19:40), 1.2.1 (2020-01-10 17:50), 1.2.3 (2021-02-12 10:50)
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Complete documentation for bnpsd
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