Other packages > Find by keyword >

bnClustOmics  

Bayesian Network-Based Clustering of Multi-Omics Data
View on CRAN: Click here


Download and install bnClustOmics package within the R console
Install from CRAN:
install.packages("bnClustOmics")

Install from Github:
library("remotes")
install_github("cran/bnClustOmics")

Install by package version:
library("remotes")
install_version("bnClustOmics", "1.1.1")



Attach the package and use:
library("bnClustOmics")
Maintained by
Polina Suter
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-10
Latest Update: 2022-08-05
Description:
Unsupervised Bayesian network-based clustering of multi-omics data. Both binary and continuous data types are allowed as inputs. The package serves a dual purpose: it clusters (patient) samples and learns the multi-omics networks that characterize discovered clusters. Prior network knowledge (e.g., public interaction databases) can be included via blacklisting and penalization matrices. For clustering, the EM algorithm is employed. For structure search at the M-step, the Bayesian approach is used. The output includes membership assignments of samples, cluster-specific MAP networks, and posterior probabilities of all edges in the discovered networks. In addition to likelihood, AIC and BIC scores are returned. They can be used for choosing the number of clusters. References: P. Suter et al. (2021) , J. Kuipers and P. Suter and G. Moffa (2022) , J. Kuipers et al. (2018) .
How to cite:
Polina Suter (2022). bnClustOmics: Bayesian Network-Based Clustering of Multi-Omics Data. R package version 1.1.1, https://cran.r-project.org/web/packages/bnClustOmics. Accessed 21 Dec. 2024.
Previous versions and publish date:
1.0.9 (2022-06-10 11:10), 1.1.1 (2022-08-05 16:50)
Other packages that cited bnClustOmics R package
View bnClustOmics citation profile
Other R packages that bnClustOmics depends, imports, suggests or enhances
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

helda  
Preprocess Data and Get Better Insights from Machine Learning Models
The main focus is on preprocessing and data visualization of machine learning models performances.So ...
Download / Learn more Package Citations See dependency  
SEIRfansy  
Extended Susceptible-Exposed-Infected-Recovery Model
Extended Susceptible-Exposed-Infected-Recovery Model for handling high false negative rate and symp ...
Download / Learn more Package Citations See dependency  
CIFsmry  
Weighted summary of cumulative incidence functions
Estimate of cumulative incidence function in two samples. Provide weighted summary statistics based ...
Download / Learn more Package Citations See dependency  
condGEE  
Parameter Estimation in Conditional GEE for Recurrent Event Gap Times
Solves for the mean parameters, the variance parameter, and their asymptotic variance in a condition ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
batteryreduction  
An R Package for Data Reduction by Battery Reduction
Battery reduction is a method used in data reduction. It uses Gram-Schmidt orthogonal rotations to f ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA