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bite
View on CRAN: Click
here
Download and install bite package within the R console
Install from CRAN:
install.packages("bite")
Install from Github:
library("remotes")
install_github("cran/bite")
Install by package version:
library("remotes")
install_version("bite", "0.3")
Attach the package and use:
library("bite")
Maintained by
Theo Gaboriau
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-04-22
Latest Update: 2020-04-22
Description:
Contains the JIVE (joint inter and intra-specific model of variance evolution) model and other Bayesian models aimed at understanding trait evolution. The goal of the package is to join phylogenetic comparative models (PCM) that tend to integrate various type of data (individual observations, environmental data, fossil data) into a hierarchical Bayesian framework. It contains various PCMs as well as functions to join those models into a hierarchical Bayesian framework in a flexible and user friendly way. It contains various Markov chain Monte-Carlo (MCMC) algorithms, methods for model comparison and many plotting function for pre- and post-processing data visualization. Finally, this package integrates functions allowing bridges between 'R' and the 'BEAST2' implementations of PCMs. Kostikova A, Silvestro D, Pearman PB, Salamin N (2016) . Gaboriau T, Mendes FK, Joly S, Silvestro D, Salamin N (in prep).
How to cite:
Theo Gaboriau (2020). bite: Bayesian Integrative Models of Trait Evolution. R package version 0.3, https://cran.r-project.org/web/packages/bite. Accessed 21 Dec. 2024.
Previous versions and publish date:
0.3 (2020-04-22 18:44)
Other packages that cited bite R package
View bite citation profile
Other R packages that bite depends,
imports, suggests or enhances
Functions, R codes and Examples using
the bite R package
Some associated functions: Anolis_map . Anolis_traits . Anolis_tree . control_jive . format_jive_traits . hpfun . make_jive . marginal_lik . mcmc_bite . plot_bf . plot_hp . plot_jive . plot_mcmc_bite . plot_post_beast . plot_pvo . sim_jive . sim_mte . xml_bite .
Some associated R codes: Anolis_map.R . Anolis_traits.R . Anolis_tree.R . beast_data.R . check_tuning.R . control_jive.R . default_tuning.R . format_jive_traits.R . hpfun.R . input_to_map.R . lik_bm.R . lik_gen.R . lik_norm.R . lik_ou.R . lik_wn.R . make_jive.R . marginal_lik.R . mcmc_bite.R . plot_bf.R . plot_hp.R . plot_hyper.R . plot_jive.R . plot_mcmc_bite.R . plot_post_beast.R . plot_pvo.R . proposal.R . sim_func.R . sim_jive.R . sim_mte.R . utils.R . xml_bite.R . xml_utilities.R . Full bite package functions and examples
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