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bipartite  

Visualising Bipartite Networks and Calculating Some (Ecological) Indices
View on CRAN: Click here


Download and install bipartite package within the R console
Install from CRAN:
install.packages("bipartite")

Install from Github:
library("remotes")
install_github("cran/bipartite")

Install by package version:
library("remotes")
install_version("bipartite", "2.20")



Attach the package and use:
library("bipartite")
Maintained by
Carsten F. Dormann
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-12-03
Latest Update: 2022-10-18
Description:
Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.
How to cite:
Carsten F. Dormann (2007). bipartite: Visualising Bipartite Networks and Calculating Some (Ecological) Indices. R package version 2.20, https://cran.r-project.org/web/packages/bipartite. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.2 (2007-12-03 11:29), 0.3 (2008-01-16 10:15), 0.4 (2008-03-05 13:01), 0.5 (2008-03-06 14:58), 0.6 (2008-05-05 10:09), 0.7 (2008-05-16 23:04), 0.8 (2008-12-21 17:35), 0.72 (2008-05-25 21:14), 0.73 (2008-06-19 13:20), 0.74 (2008-10-25 14:52), 0.82 (2009-01-30 14:13), 0.83 (2009-02-09 19:37), 0.84 (2009-02-25 15:39), 0.85 (2009-03-11 21:15), 0.90 (2009-03-24 19:56), 0.91 (2009-05-06 19:14), 0.92 (2009-06-03 19:31), 0.93 (2009-06-25 17:10), 0.94 (2009-08-01 15:57), 1.00 (2009-08-06 12:55), 1.02 (2009-09-12 14:18), 1.03 (2009-11-05 20:43), 1.05 (2009-12-06 10:22), 1.06 (2009-12-17 18:17), 1.07 (2010-02-19 13:06), 1.08 (2010-03-15 11:10), 1.09 (2010-03-23 14:49), 1.10 (2010-05-03 15:32), 1.11 (2010-05-11 16:41), 1.12 (2010-05-22 08:35), 1.13 (2010-09-30 07:41), 1.14 (2010-12-21 18:03), 1.15 (2011-03-04 15:49), 1.16 (2011-05-29 09:55), 1.17 (2011-08-10 18:21), 1.18 (2012-09-17 10:29), 2.00 (2013-03-17 16:48), 2.01 (2013-06-27 10:07), 2.02 (2013-09-30 12:51), 2.03 (2014-01-11 12:48), 2.04 (2014-03-25 10:14), 2.05 (2014-11-25 09:50), 2.06.1 (2016-07-10 16:47), 2.06 (2016-04-19 00:34), 2.07 (2016-11-08 11:49), 2.08 (2017-03-31 08:30), 2.11 (2018-07-11 11:00), 2.13 (2019-05-21 19:20), 2.14 (2020-01-09 00:02), 2.15 (2020-04-03 11:20), 2.16 (2021-02-04 16:30), 2.17 (2022-04-20 12:12), 2.18 (2022-10-19 01:35), 2.19 (2023-11-30 17:40)
Other packages that cited bipartite R package
View bipartite citation profile
Other R packages that bipartite depends, imports, suggests or enhances
Complete documentation for bipartite
Functions, R codes and Examples using the bipartite R package
Some associated functions: C.score . H2fun . NOS . PDI . Safariland . V.ratio . array2linkmx . as.one.mode . as.tnet . barrett1987 . betalinkr . betweenness_w . bezerra2009 . bipartite-package . closeness_w . clustering_tm . compart . computeModules . czvalues . decimalr2dtable . degreedistr . dfun . discrepancy . distance_w . elberling1999 . empty . endpoint . extinction . fc . frame2webs . genweb . grouplevel . inouye1988 . junker2013 . kato1990 . kevan1970 . linklevel . listModuleInformation . memmott1999 . mgen . moduleWeb-class . modulesLPA . mosquin1967 . motten1982 . nest.smdm . nested . nestedcontribution . nestedness . nestedrank . networklevel . nodespec . npartite . null.distr . null.t.test . olesen2002aigrettes . olesen2002flores . olito2015 . ollerton2003 . plotModuleWeb . plotPAC . plotmatrix . plotweb . printoutModuleInformation . projecting_tm . r2dexternal . restrictednull . schemske1978 . second.extinct . shuffle.web . slope.bipartite . small1976 . sortmatrix . sortweb . specieslevel . strength . swap.web . symmetrise_w . tnet_igraph . togetherness . vazarr . vazcer . vazllao . vazmasc . vazmasnc . vazquec . vazquenc . versionlog . visweb . web2edges . webs2array . 
Some associated R codes: C.score.R . H2fun.R . NOS.R . PDI.R . V.ratio.R . array2linkmx.R . as.tnet.R . betalinkr.R . betalinkr_multi.R . betweenness_w.R . closeness_w.R . clustering_tm.R . compart.R . computeModules.R . czvalues.R . decimalr2dtable.R . degreedistr.R . dfun.R . distance_w.R . drawModules.R . empty.R . endpoint.R . extinction.R . fc.R . frame2webs.R . getModuleCoordinates.R . grouplevel.R . linklevel.R . metaComputeModules.R . mgen.R . modulesLPA.R . nest.smdm.R . nestedcontribution.R . nestedness.R . nestedrank.R . networklevel.R . npartite.R . plotModuleWeb.R . plotPAC.R . plotmatrix.R . plotweb.R . plotweb2.R . prepareWebForPlottingModules.R . projecting_tm.R . r2dexternal.R . restrictednull.R . second.extinct.R . shuffle.web.R . slope.bipartite.R . sortmatrix.R . specieslevel.R . strength.R . swap.web.R . symmetrise_w.R . tnet_igraph.R . vaznullexternal.R . versionlog.R . visweb.R . web2edges.R . webs2array.R . zzz.R .  Full bipartite package functions and examples
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