Other packages > Find by keyword >

biospear  

Biomarker Selection in Penalized Regression Models
View on CRAN: Click here


Download and install biospear package within the R console
Install from CRAN:
install.packages("biospear")

Install from Github:
library("remotes")
install_github("cran/biospear")

Install by package version:
library("remotes")
install_version("biospear", "1.0.2")



Attach the package and use:
library("biospear")
Maintained by
Stefan Michiels
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-13
Latest Update: 2018-12-04
Description:
Provides some tools for developing and validating prediction models, estimate expected survival of patients and visualize them graphically. Most of the implemented methods are based on penalized regressions such as: the lasso (Tibshirani R (1996)), the elastic net (Zou H et al. (2005) ), the adaptive lasso (Zou H (2006) ), the stability selection (Meinshausen N et al. (2010) ), some extensions of the lasso (Ternes et al. (2016) ), some methods for the interaction setting (Ternes N et al. (2016) ), or others. A function generating simulated survival data set is also provided.
How to cite:
Stefan Michiels (2017). biospear: Biomarker Selection in Penalized Regression Models. R package version 1.0.2, https://cran.r-project.org/web/packages/biospear. Accessed 05 Jun. 2026.
Previous versions and publish date:
1.0.0 (2017-05-13 14:55), 1.0.1 (2017-08-11 11:56)
Other packages that cited biospear R package
View biospear citation profile
Other R packages that biospear depends, imports, suggests or enhances
Complete documentation for biospear
Functions, R codes and Examples using the biospear R package
Some associated functions: BMsel . Breast . expSurv . predRes . selRes . simdata . 
Some associated R codes: BMsel.R . PCAlasso.R . PLSlasso.R . alasso.R . colCheck.R . dataTrans.R . enet.R . expSurv.R . gboost.R . glasso.R . lGrid.R . lasso.R . modCov.R . penExt.R . poissonize.R . predRes.R . ridge.R . ridgelasso.R . selRes.R . simdata.R . simdataV.R . stabSel.R . uniFDR.R . unii.R .  Full biospear package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  
crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA