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biogrowth  

Modelling of Population Growth
View on CRAN: Click here


Download and install biogrowth package within the R console
Install from CRAN:
install.packages("biogrowth")

Install from Github:
library("remotes")
install_github("cran/biogrowth")

Install by package version:
library("remotes")
install_version("biogrowth", "1.0.5")



Attach the package and use:
library("biogrowth")
Maintained by
Alberto Garre
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-22
Latest Update: 2023-08-19
Description:
Modelling of population growth under static and dynamic environmental conditions. Includes functions for model fitting and making prediction under isothermal and dynamic conditions. The methods (algorithms & models) are based on predictive microbiology (See Perez-Rodriguez and Valero (2012, ISBN:978-1-4614-5519-6)).
How to cite:
Alberto Garre (2020). biogrowth: Modelling of Population Growth. R package version 1.0.5, https://cran.r-project.org/web/packages/biogrowth. Accessed 03 Dec. 2024.
Previous versions and publish date:
0.1.0 (2020-10-22 10:50), 0.1.1 (2020-11-12 01:40), 0.1.2 (2020-11-26 16:50), 0.2.0 (2021-01-27 19:40), 0.2.1 (2021-06-22 16:10), 0.2.2 (2021-07-06 18:10), 0.2.3 (2021-08-23 13:20), 1.0.0-1 (2022-05-31 18:00), 1.0.0-2 (2022-07-19 19:10), 1.0.0-3 (2022-08-28 22:50), 1.0.0 (2022-05-31 10:20), 1.0.1 (2022-12-02 19:50), 1.0.2 (2022-12-19 18:20), 1.0.3 (2023-08-19 02:22), 1.0.4 (2024-04-29 14:00)
Other packages that cited biogrowth R package
View biogrowth citation profile
Other R packages that biogrowth depends, imports, suggests or enhances
Complete documentation for biogrowth
Functions, R codes and Examples using the biogrowth R package
Some associated functions: CPM_model . DynamicGrowth . FitDynamicGrowth . FitDynamicGrowthMCMC . FitIsoGrowth . FitMultipleDynamicGrowth . FitMultipleGrowthMCMC . FitSecondaryGrowth . GlobalGrowthComparison . GlobalGrowthFit . GrowthComparison . GrowthFit . GrowthPrediction . GrowthUncertainty . IsothermalGrowth . MCMCgrowth . Q0_to_lambda . SecondaryComparison . StochasticGrowth . TimeDistribution . approx_env . arabian_tractors . biogrowth-package . calculate_gammas . calculate_gammas_secondary . check_growth_guess . check_primary_pars . check_secondary_pars . check_stochastic_pars . compare_growth_fits . compare_secondary_fits . conditions_pH_temperature . dBaranyi . distribution_to_logcount . example_cardinal . example_dynamic_growth . example_env_conditions . extract_primary_pars . extract_secondary_pars . fit_MCMC_growth . fit_dynamic_growth . fit_growth . fit_isothermal_growth . fit_multiple_growth . fit_multiple_growth_MCMC . fit_secondary_growth . full_Ratkowski . get_all_predictions . get_dyna_residuals . get_iso_residuals . get_multi_dyna_residuals . get_secondary_residuals . greek_tractors . growth_pH_temperature . growth_salmonella . is.DynamicGrowth . is.FitDynamicGrowth . is.FitDynamicGrowthMCMC . is.FitIsoGrowth . is.FitMultipleDynamicGrowth . is.FitMultipleDynamicGrowthMCMC . is.FitSecondaryGrowth . is.GlobalGrowthFit . is.GrowthFit . is.GrowthPrediction . is.GrowthUncertainty . is.IsothermalGrowth . is.MCMCgrowth . is.StochasticGrowth . iso_Baranyi . iso_repGompertz . lambda_to_Q0 . logistic_model . make_guess_factor . make_guess_primary . make_guess_secondary . multiple_conditions . multiple_counts . multiple_experiments . predictMCMC . predict_MCMC_growth . predict_dynamic_growth . predict_growth . predict_growth_uncertainty . predict_isothermal_growth . predict_stochastic_growth . primary_model_data . refrigeratorSpain . richards_model . secondary_model_data . show_guess_dynamic . show_guess_primary . time_to_logcount . time_to_size . trilinear_model . zwietering_gamma . 
Some associated R codes: CompareIsoGrowth_class.R . DynamicGrowth_class.R . FitDynamicGrowthMCMC_class.R . FitDynamicGrowth_class.R . FitIsoGrowth_class.R . FitMultipleDynamicGrowth_class.R . FitMultipleGrowthMCMC_class.R . FitSecondaryGrowth_class.R . GlobalGrowthComparison_class.R . GlobalGrowthFit_class.R . GrowthFit_class.R . GrowthPrediction_class.R . GrowthUncertainty_class.R . IsothermalGrowth_class.R . MCMCgrowth_class.R . S3_methods.R . SecondaryGrowthComparison_class.R . StochasticGrowth_class.R . TimeDistribution_class.R . baranyi_model.R . biogrowth-package.R . data.R . fit_dynamic_growth.R . fit_iso_growth.R . fit_multi_dynamic.R . fit_secondary_models.R . functions_counts.R . gamma_models.R . helpers.R . initial_guesses.R . meatinfo_primary.R . metainfo_secondary.R . model_comparison.R . predictMCMC.R . predict_MCMC_growth.R . predict_dynamic_growth.R . predict_isothermal_growth.R . predict_stochastic_growth.R . top_fit.R . top_predict.R .  Full biogrowth package functions and examples
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