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bioclients  

Clients for Biological Database Web Services
View on CRAN: Click here


Download and install bioclients package within the R console
Install from CRAN:
install.packages("bioclients")

Install from Github:
library("remotes")
install_github("cran/bioclients")

Install by package version:
library("remotes")
install_version("bioclients", "0.1.1")



Attach the package and use:
library("bioclients")
Maintained by
Samuel Bharti
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-09-15
Latest Update: 2026-09-15
Description:
Look up genes, variants and proteins from R, without writing a client for every biological web service. Each service gets one client that makes the request and returns a table. Parsing is a separate function that needs no network, so it can run on a saved response and be tested offline. Transport, retries, caching and error handling are left to the 'biohttp' package. Dependencies for single services are optional, so you do not install what you will not use. The services covered include 'Ensembl', described in Dyer et al. (2025) <doi:10.1093/nar/gkae1071>, 'UniProt', in The UniProt Consortium (2025) <doi:10.1093/nar/gkae1010>, 'gnomAD', in Chen et al. (2024) <doi:10.1038/s41586-023-06045-0>, 'Open Targets', in Buniello et al. (2025) <doi:10.1093/nar/gkae1128>, and the 'AlphaFold' Protein Structure Database, in Varadi et al. (2024) <doi:10.1093/nar/gkad1011>. Each client's help page cites the service it calls.
How to cite:
Samuel Bharti (2026). bioclients: Clients for Biological Database Web Services. R package version 0.1.1, https://cran.r-project.org/web/packages/bioclients. Accessed 24 Oct. 2026.
Previous versions and publish date:
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Complete documentation for bioclients
Functions, R codes and Examples using the bioclients R package
Full bioclients package functions and examples
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