R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
bio3d
Biological Structure Analysis
View on CRAN: Click
here
Download and install bio3d package within the R console
Install from CRAN:
install.packages("bio3d")
Install from Github:
library("remotes")
install_github("cran/bio3d") Install by package version:
library("remotes")
install_version("bio3d", "2.4-5") Attach the package and use:
library("bio3d")
Maintained by
Barry Grant
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.bio3d . http://thegrantlab.org/bio3d/ . https://bitbucket.org/Grantlab/bio3d/ . bio3d citation info . bio3d results . bio3d.pdf . bio3d Vignettes . bio3d_2.4-5.tar.gz . bio3d_2.4-5.zip . bio3d_2.4-5.zip . bio3d_2.4-5.zip . bio3d_2.4-5.tgz . bio3d_2.4-5.tgz . bio3d_2.4-5.tgz . bio3d_2.4-5.tgz . bio3d_2.4-5.tgz . bio3d_2.4-5.tgz . bio3d archive . https://CRAN.R-project.org/package=bio3d .
First Published: 2014-10-15
Latest Update: 2022-10-26
Description:
Utilities to process, organize and explore protein structure,
sequence and dynamics data. Features include the ability to read and write
structure, sequence and dynamic trajectory data, perform sequence and structure
database searches, data summaries, atom selection, alignment, superposition,
rigid core identification, clustering, torsion analysis, distance matrix
analysis, structure and sequence conservation analysis, normal mode analysis,
principal component analysis of heterogeneous structure data, and correlation
network analysis from normal mode and molecular dynamics data. In addition,
various utility functions are provided to enable the statistical and graphical
power of the R environment to work with biological sequence and structural data.
Please refer to the URLs below for more information.
How to cite:
Barry Grant (2014). bio3d: Biological Structure Analysis. R package version 2.4-5, https://cran.r-project.org/web/packages/bio3d. Accessed 07 Apr. 2025.
Previous versions and publish date:
2.1-1 (2014-10-15 23:57), 2.1-2 (2014-10-21 18:12), 2.1-3 (2014-10-27 19:03), 2.2-1 (2015-02-27 07:18), 2.2-2 (2015-03-03 07:34), 2.2-3 (2015-09-04 21:49), 2.2-4 (2015-12-12 09:12), 2.3-0 (2016-09-30 23:15), 2.3-1 (2016-11-12 00:27), 2.3-2 (2017-06-15 01:30), 2.3-3 (2017-07-31 06:23), 2.3-4 (2018-04-03 09:42), 2.4-0 (2019-11-26 18:40), 2.4-1 (2020-01-21 08:50), 2.4-2 (2021-05-11 09:02), 2.4-3 (2022-03-10 23:30), 2.4-4 (2022-10-27 00:45)
Other packages that cited bio3d R package
View bio3d citation profile
Other R packages that bio3d depends,
imports, suggests or enhances
Complete documentation for bio3d
Functions, R codes and Examples using
the bio3d R package
Some associated functions: aa.index . aa.table . aa123 . aa2index . aa2mass . aanma.pdb . aanma.pdbs . aln2html . angle.xyz . as.fasta . as.pdb . as.select . atom.index . atom.select . atom2ele . atom2mass . atom2xyz . basename.pdb . bhattacharyya . binding.site . bio3d.package . biounit . blast.pdb . bounds . bounds.sse . bwr.colors . cat.pdb . chain.pdb . check.utility . clean.pdb . cmap . cna . cnapath . com . combine.select . community.aln . community.tree . consensus . conserv . convert.pdb . core.cmap . core.find . cov.nma . covsoverlap . dccm.enma . dccm.gnm . dccm.nma . dccm . dccm.pca . dccm.xyz . deformation.nma . diag.ind . difference.vector . dist.xyz . dm . dssp . elements . entropy . example.data . filter.cmap . filter.dccm . filter.identity . filter.rmsd . fit.xyz . fluct.nma . formula2mass . gap.inspect . geostas . get.pdb . get.seq . gnm . hclustplot . hmmer . identify.cna . inner.prod . inspect.connectivity . is.gap . is.mol2 . is.pdb . is.select . is.xyz . layout.cna . lbio3d . load.enmff . mask.dccm . mktrj . motif.find . mustang . network.amendment . nma . nma.pdb . nma.pdbs . normalize.vector . orient.pdb . overlap . pairwise . pca.array . pca . pca.pdbs . pca.tor . pca.xyz . pdb.annotate . pdb2aln.ind . pdb2aln . pdb2sse . pdbaln . pdbfit . pdbs2pdb . pdbs2sse . pdbseq . pdbsplit . pfam . plot.bio3d . plot.cmap . plot.cna . plot.core . plot.dccm . plot.dmat . plot.enma . plot.fasta . plot.fluct . plot.geostas . plot.hmmer . plot.matrix.loadings . plot.nma . plot.pca.loadings . plot.pca . plot.rmsip . print.cna . print.core . print.fasta . print.xyz . project.pca . prune.cna . pymol . read.all . read.cif . read.crd.amber . read.crd.charmm . read.crd . read.dcd . read.fasta . read.fasta.pdb . read.mol2 . read.ncdf . read.pdb . read.pdcBD . read.pqr . read.prmtop . rgyr . rle2 . rmsd . rmsf . rmsip . sdENM . seq2aln . seqaln . seqaln.pair . seqbind . seqidentity . setup.ncore . sip . sse.bridges . store.atom . struct.aln . torsion.pdb . torsion.xyz . trim.mol2 . trim.pdb . trim.pdbs . trim.xyz . unbound . uniprot . var.xyz . vec2resno . vmd.cna . vmd_colors . wrap.tor . write.crd . write.fasta . write.mol2 . write.ncdf . write.pdb . write.pir . write.pqr .
Some associated R codes: RcppExports.R . aa123.R . aa2index.R . aa2mass.R . aa321.R . aanma.R . aanma.pdb.R . aanma.pdbs.R . aln2html.R . amsm.xyz.R . angle.xyz.R . arg_filter.R . as.fasta.R . as.pdb.R . as.pdb.mol2.R . as.pdb.prmtop.R . as.select.R . as.xyz.R . atom.select.R . atom.select.mol2.R . atom.select.pdb.R . atom.select.pdbs.R . atom.select.prmtop.R . atom2ele.R . atom2mass.R . atom2xyz.R . basename.pdb.R . bhattacharyya.R . binding.site.R . biounit.R . blast.pdb.R . bounds.R . bounds.sse.R . build.hessian.R . bwr.colors.R . cat.pdb.R . chain.pdb.R . check.utility.R . clean.pdb.R . cmap.R . cmap.pdb.R . cna.R . cna.dccm.R . cna.ensmb.R . cnapath.R . com.R . com.pdb.R . com.xyz.R . combine.select.R . community.aln.R . community.tree.R . consensus.R . conserv.R . convert.pdb.R . core.cmap.R . core.find.R . cov.nma.R . covsoverlap.R . dccm.R . dccm.enma.R . dccm.gnm.R . dccm.nma.R . dccm.pca.R . dccm.xyz.R . deformation.nma.R . diag.ind.R . difference.vector.R . dist.xyz.R . dm.R . dm.xyz.R . dssp.R . dssp.pdb.R . dssp.pdbs.R . dssp.xyz.R . entropy.R . exefile.R . filter.cmap.R . filter.dccm.R . filter.identity.R . filter.rmsd.R . fit.xyz.R . fluct.nma.R . formula2mass.R . gap.inspect.R . geostas.R . get.blast.R . get.pdb.R . get.seq.R . gnm.R . gnm.pdbs.R . hclustplot.R . hmmer.R . identify.cna.R . inner.prod.R . inspect.connectivity.R . is.gap.R . is.mol2.R . is.pdb.R . is.select.R . is.xyz.R . layout.cna.R . lbio3d.R . load.enmff.R . mask.dccm.R . mktrj.R . mktrj.enma.R . mktrj.nma.R . mktrj.pca.R . mono.colors.R . motif.find.R . mustang.R . network.amendment.R . nma.R . nma.pdb.R . nma.pdbs.R . nma_funs.R . normalize.vector.R . orient.pdb.R . overlap.R . pairwise.R . pb.R . pca.R . pca.array.R . pca.pdbs.R . pca.tor.R . pca.xyz.R . pdb.annotate.R . pdb.pfam.R . pdb2aln.R . pdb2aln.ind.R . pdb2sse.R . pdbaln.R . pdbfit.R . pdbs2pdb.R . pdbs2sse.R . pdbseq.R . pdbsplit.R . pfam.R . plot.blast.R . plot.cmap.R . plot.cna.R . plot.core.R . plot.dccm.R . plot.dmat.R . plot.enma.R . plot.fasta.R . plot.fluct.R . plot.geostas.R . plot.hmmer.R . plot.matrix.loadings.R . plot.nma.R . plot.pca.R . plot.pca.loadings.R . plot.pca.score.R . plot.pca.scree.R . plot.rmsip.R . plotb3.R . print.cna.R . print.core.R . print.enma.R . print.fasta.R . print.geostas.R . print.nma.R . print.pca.R . print.pdb.R . print.prmtop.R . print.select.R . print.sse.R . print.xyz.R . project.pca.R . prune.cna.R . pymol.dccm.R . pymol.modes.R . pymol.pdbs.R . read.all.R . read.cif.R . read.crd.R . read.crd.amber.R . read.crd.charmm.R . read.dcd.R . read.fasta.R . read.fasta.pdb.R . read.mol2.R . read.ncdf.R . read.pdb.R . read.pdb2.R . read.pdcBD.R . read.pqr.R . read.prmtop.R . rgyr.R . rle2.R . rmsd.R . rmsf.R . rmsip.R . rot.lsq.R . rtb.R . seq2aln.R . seqaln.R . seqaln.pair.R . seqbind.R . seqidentity.R . setup.ncore.R . sip.R . sse.bridges.R . store.atom.R . stride.R . struct.aln.R . summary.cna.R . summary.cnapath.R . summary.pdb.R . torsion.pdb.R . torsion.xyz.R . trim.mol2.R . trim.pdb.R . trim.pdbs.R . trim.xyz.R . unbound.R . uniprot.R . var.xyz.R . vec2resno.R . vmd.R . vmd.cna.R . vmd.cnapath.R . vmd_colors.R . wrap.tor.R . write.crd.R . write.fasta.R . write.mol2.R . write.ncdf.R . write.pdb.R . write.pir.R . write.pqr.R . xyz2atom.R . Full bio3d package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
letsR
Data Handling and Analysis in Macroecology
Handling, processing, and analyzing geographic
data on species' distributions and environmental var ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Bruno Vilela (view profile)
nutriNetwork
Structure Learning with Copula Graphical Model
Statistical tool for learning the structure of direct associations among variables for
continuous d ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pariya Behrouzi (view profile)
MetaAnalyser
An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine
An interactive application to visualise meta-analysis data as a
physical weighing machine. The inte ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Christopher Jackson (view profile)
r2resize
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
probout
Unsupervised Multivariate Outlier Probabilities for Large Datasets
Estimates unsupervised outlier probabilities for multivariate numeric data with many observations fr ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Chris Fraley (view profile)
ASMap
Linkage Map Construction using the MSTmap Algorithm
Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Ha ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Julian Taylor (view profile)
24,012
R Packages
207,311
Dependencies
64,867
Author Associations
24,013
Publication Badges
