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bigsnpr  

Analysis of Massive SNP Arrays
View on CRAN: Click here


Download and install bigsnpr package within the R console
Install from CRAN:
install.packages("bigsnpr")

Install from Github:
library("remotes")
install_github("cran/bigsnpr")

Install by package version:
library("remotes")
install_version("bigsnpr", "1.12.18")



Attach the package and use:
library("bigsnpr")
Maintained by
Florian Privé
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-12-05
Latest Update: 2023-03-28
Description:
Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Priv
How to cite:
Florian Privé (2017). bigsnpr: Analysis of Massive SNP Arrays. R package version 1.12.18, https://cran.r-project.org/web/packages/bigsnpr. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.2.2 (2017-12-05 10:54), 0.2.4 (2018-02-02 00:01), 1.2.1 (2020-02-03 20:50), 1.2.2 (2020-02-07 13:10), 1.3.0 (2020-03-09 21:00), 1.4.4 (2020-07-05 20:40), 1.5.2 (2020-11-01 17:20), 1.6.1 (2021-01-11 23:40), 1.8.1 (2021-06-03 13:00), 1.9.10 (2022-02-13 10:20), 1.9.11 (2022-02-16 18:50), 1.10.8 (2022-07-09 11:20), 1.11.4 (2022-10-21 18:05), 1.11.6 (2022-11-07 12:40), 1.12.2 (2023-03-28 11:20), 1.12.15 (2024-09-20 16:50)
Other packages that cited bigsnpr R package
View bigsnpr citation profile
Other R packages that bigsnpr depends, imports, suggests or enhances
Complete documentation for bigsnpr
Functions, R codes and Examples using the bigsnpr R package
Some associated functions: LD.wiki34 . LDpred2 . SCT . bed-class . bed-methods . bed_MAF . bed_counts . bed_cprodVec . bed_prodVec . bed_projectPCA . bed_projectSelfPCA . bed_randomSVD . bed_scaleBinom . bed_tcrossprodSelf . bigSNP-class . bigsnpr-package . coef_to_liab . download_1000G . download_beagle . download_plink . reexports . same_ref . seq_log . snp_MAF . snp_MAX3 . snp_PRS . snp_ancestry_summary . snp_asGeneticPos . snp_attach . snp_attachExtdata . snp_autoSVD . snp_beagleImpute . snp_clumping . snp_codes . snp_cor . snp_fake . snp_fastImpute . snp_fastImputeSimple . snp_fst . snp_gc . snp_getSampleInfos . snp_lassosum2 . snp_ld_scores . snp_ldsc . snp_ldsplit . snp_manhattan . snp_match . snp_modifyBuild . snp_pcadapt . snp_plinkIBDQC . snp_plinkKINGQC . snp_plinkQC . snp_plinkRmSamples . snp_prodBGEN . snp_qq . snp_readBGEN . snp_readBGI . snp_readBed . snp_save . snp_scaleBinom . snp_simuPheno . snp_split . snp_subset . snp_thr_correct . snp_writeBed . sub-bed-ANY-ANY-ANY-method . sub_bed . 
Some associated R codes: Fst.R . LDpred2.R . MAX3.R . PRS.R . RcppExports.R . SCT.R . apply-parallelize.R . autoSVD.R . bed-class.R . bed-clumping.R . bed-mat-acc.R . bed-mult-vec.R . bed-projectPCA.R . bed-tcrossprodSelf.R . bigSNP-class.R . bigsnpr-package.R . binom-scaling.R . clumping.R . corr.R . external-software.R . fake.R . get-save-infos.R . impute.R . lassosum2.R . ld-scores.R . ldsc.R . man-qq-gc.R . match-alleles.R . pcadapt.R . prod-bgen.R . read-bgen.R . read-plink.R . simu-pheno.R . split-LD.R . subset-QC.R . utils-assert.R . utils.R . write-plink.R .  Full bigsnpr package functions and examples
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