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bexy
View on CRAN: Click
here
Download and install bexy package within the R console
Install from CRAN:
install.packages("bexy")
Install from Github:
library("remotes")
install_github("cran/bexy")
Install by package version:
library("remotes")
install_version("bexy", "0.1.3")
Attach the package and use:
library("bexy")
Maintained by
Madleina Caduff
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-11-29
Latest Update: 2023-11-29
Description:
Provides functions for summarizing and plotting the output of the command-line tool 'BeXY' (), a tool that performs Bayesian inference of sex chromosome karyotypes and sex-linked scaffolds from low-depth sequencing data.
How to cite:
Madleina Caduff (2023). bexy: Visualize and Parse the Output of 'BeXY'. R package version 0.1.3, https://cran.r-project.org/web/packages/bexy. Accessed 03 Dec. 2024.
Previous versions and publish date:
0.1.2 (2023-11-29 20:00)
Other packages that cited bexy R package
View bexy citation profile
Other R packages that bexy depends,
imports, suggests or enhances
Complete documentation for bexy
Functions, R codes and Examples using
the bexy R package
Some associated functions: bexy . dot-addLegend.bexy . dot-addLegendAutosomalTrisomy.bexy . dot-getAllPossibleAutosomalTrisomy.bexy . dot-getAllPossibleScaffoldTypes.bexy . dot-getAllPossibleSexKaryotypes.bexy . dot-getColumns.bexy . dot-getIndexScaffoldAutosomalTrisomy.bexy . dot-getInputTernary.bexy . dot-getSamplesToHighlight.bexy . dot-getSamplesToHighlightAutosomalTrisomy.bexy . dot-getScaffoldNames.bexy . dot-getStringWidth.bexy . dot-openFile.bexy . dot-plotAutosomalTrisomy.bexy . dot-plotTernary.bexy . dot-plotTernaryAndTicTacToe.bexy . dot-plotTicTacToeWithCoordinates.bexy . dot-plotXVsY.bexy . dot-renameHeader.bexy . getPosteriorMeanRho . getPosteriorModeAutosomalTrisomy . getPosteriorModeScaffoldTypes . getPosteriorModeSexKaryotypes . getSamplesWithAutosomalTrisomy . getSamplesWithThisKaryotype . getScaffoldsWithThisType . plot.bexy . plotAutosomalTrisomy . plotAutosomalTrisomyCounts . plotAutosomalTrisomyPosteriorProbabilities . plotMCMCTrace . plotTernary . plotXY . print.bexy . summary.bexy . writePosteriorModeAutosomalTrisomies . writePosteriorModeScaffoldTypes . writePosteriorModeSexKaryotypes .
Some associated R codes: bexy.R . Full bexy package functions and examples
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