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bbmix  

Bayesian Model for Genotyping using RNA-Seq
View on CRAN: Click here


Download and install bbmix package within the R console
Install from CRAN:
install.packages("bbmix")

Install from Github:
library("remotes")
install_github("cran/bbmix")

Install by package version:
library("remotes")
install_version("bbmix", "1.0.0")



Attach the package and use:
library("bbmix")
Maintained by
Elena Vigorito
[Scholar Profile | Author Map]
First Published: 2023-07-06
Latest Update: 2023-07-06
Description:
The method models RNA-seq reads using a mixture of 3 beta-binomial distributions to generate posterior probabilities for genotyping bi-allelic single nucleotide polymorphisms. Elena Vigorito, Anne Barton, Costantino Pitzalis, Myles J. Lewis and Chris Wallace (2023) "BBmix: a Bayesian beta-binomial mixture model for accurate genotyping from RNA-sequencing."
How to cite:
Elena Vigorito (2023). bbmix: Bayesian Model for Genotyping using RNA-Seq. R package version 1.0.0, https://cran.r-project.org/web/packages/bbmix. Accessed 04 May. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited bbmix R package
View bbmix citation profile
Other R packages that bbmix depends, imports, suggests or enhances
Complete documentation for bbmix
Functions, R codes and Examples using the bbmix R package
Some associated functions: bbmix-package . call_gt . call_help . ex_alt_hom . fit_bb . gt_help . poolreads . 
Some associated R codes: bbmix-package.R . bbmix.R . stanmodels.R .  Full bbmix package functions and examples
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