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batchtools  

Tools for Computation on Batch Systems
View on CRAN: Click here


Download and install batchtools package within the R console
Install from CRAN:
install.packages("batchtools")

Install from Github:
library("remotes")
install_github("cran/batchtools")

Install by package version:
library("remotes")
install_version("batchtools", "0.9.17")



Attach the package and use:
library("batchtools")
Maintained by
Michel Lang
[Scholar Profile | Author Map]
First Published: 2016-11-08
Latest Update: 2023-04-20
Description:
As a successor of the packages 'BatchJobs' and 'BatchExperiments', this package provides a parallel implementation of the Map function for high performance computing systems managed by schedulers 'IBM Spectrum LSF' (), 'OpenLava' (), 'Univa Grid Engine'/'Oracle Grid Engine' (), 'Slurm' (), 'TORQUE/PBS' (), or 'Docker Swarm' (). A multicore and socket mode allow the parallelization on a local machines, and multiple machines can be hooked up via SSH to create a makeshift cluster. Moreover, the package provides an abstraction mechanism to define large-scale computer experiments in a well-organized and reproducible way.
How to cite:
Michel Lang (2016). batchtools: Tools for Computation on Batch Systems. R package version 0.9.17, https://cran.r-project.org/web/packages/batchtools. Accessed 29 Apr. 2025.
Previous versions and publish date:
0.9.0 (2016-11-08 00:59), 0.9.2 (2017-02-20 17:06), 0.9.3 (2017-04-22 00:50), 0.9.4 (2017-08-07 20:51), 0.9.5 (2017-08-18 17:24), 0.9.6 (2017-09-06 22:33), 0.9.7 (2017-11-15 22:39), 0.9.8 (2017-12-15 14:16), 0.9.9 (2018-05-15 00:39), 0.9.10 (2018-08-16 07:40), 0.9.11 (2018-08-16 13:40), 0.9.12 (2020-01-10 17:30), 0.9.13 (2020-03-20 00:00), 0.9.14 (2020-10-21 22:50), 0.9.15 (2021-01-11 13:40), 0.9.16 (2023-02-03 14:52)
Other packages that cited batchtools R package
View batchtools citation profile
Other R packages that batchtools depends, imports, suggests or enhances
Complete documentation for batchtools
Functions, R codes and Examples using the batchtools R package
Some associated functions: JobCollection . JobExperiment . JobNames . JoinTables . Tags . Worker . addAlgorithm . addExperiments . addProblem . assertRegistry . batchExport . batchMap . batchMapResults . batchReduce . batchtools-package . btlapply . cfBrewTemplate . cfHandleUnknownSubmitError . cfKillJob . cfReadBrewTemplate . chunk . clearRegistry . doJobCollection . estimateRuntimes . execJob . findConfFile . findJobs . findTemplateFile . getDefaultRegistry . getErrorMessages . getJobTable . getStatus . grepLogs . killJobs . loadRegistry . loadResult . makeClusterFunctions . makeClusterFunctionsDocker . makeClusterFunctionsInteractive . makeClusterFunctionsLSF . makeClusterFunctionsMulticore . makeClusterFunctionsOpenLava . makeClusterFunctionsSGE . makeClusterFunctionsSSH . makeClusterFunctionsSlurm . makeClusterFunctionsSocket . makeClusterFunctionsTORQUE . makeExperimentRegistry . makeRegistry . makeSubmitJobResult . reduceResults . reduceResultsList . removeExperiments . removeRegistry . resetJobs . runHook . runOSCommand . saveRegistry . showLog . submitJobs . summarizeExperiments . sweepRegistry . syncRegistry . testJob . unwrap . waitForJobs . 
Some associated R codes: Algorithm.R . ExperimentRegistry.R . Export.R . Hooks.R . Job.R . JobCollection.R . JobNames.R . JobTables.R . Joins.R . Logs.R . Problem.R . RDSReader.R . Registry.R . Tags.R . Worker.R . addExperiments.R . batchMap.R . batchMapResults.R . batchReduce.R . btlapply.R . chunkIds.R . clearRegistry.R . clusterFunctions.R . clusterFunctionsDocker.R . clusterFunctionsInteractive.R . clusterFunctionsLSF.R . clusterFunctionsMulticore.R . clusterFunctionsOpenLava.R . clusterFunctionsSGE.R . clusterFunctionsSSH.R . clusterFunctionsSlurm.R . clusterFunctionsSocket.R . clusterFunctionsTORQUE.R . config.R . doJobCollection.R . estimateRuntimes.R . execJob.R . files.R . findJobs.R . getDefaultRegistry.R . getErrorMessages.R . getStatus.R . helpers.R . ids.R . killJobs.R . loadRegistry.R . loadResult.R . mergeRegistries.R . reduceResults.R . removeExperiments.R . removeRegistry.R . resetJobs.R . runOSCommand.R . saveRegistry.R . sleep.R . submitJobs.R . summarizeExperiments.R . sweepRegistry.R . syncRegistry.R . testJob.R . unwrap.R . updateRegisty.R . waitForFiles.R . waitForJobs.R . zzz.R .  Full batchtools package functions and examples
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