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baldur
View on CRAN: Click
here
Download and install baldur package within the R console
Install from CRAN:
install.packages("baldur")
Install from Github:
library("remotes")
install_github("cran/baldur")
Install by package version:
library("remotes")
install_version("baldur", "0.0.3")
Attach the package and use:
library("baldur")
Maintained by
Philip Berg
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.baldur . https://github.com/PhilipBerg/baldur/issues . https://github.com/PhilipBerg/baldur . baldur results . baldur.pdf . baldur_0.0.3.tar.gz . baldur_0.0.3.zip . baldur_0.0.3.zip . baldur_0.0.3.zip . baldur_0.0.3.tgz . baldur_0.0.3.tgz . baldur_0.0.3.tgz . baldur_0.0.3.tgz . baldur archive . https://CRAN.R-project.org/package=baldur .
First Published: 2023-05-16
Latest Update: 2023-09-18
Description:
Statistical decision in proteomics data using a hierarchical
Bayesian model. There are two regression models for describing the
mean-variance trend, a gamma regression or a latent gamma mixture
regression. The regression model is then used as an Empirical Bayes
estimator for the prior on the variance in a peptide. Further, it assumes
that each measurement has an uncertainty (increased variance) associated
with it that is also inferred. Finally, it tries to estimate the posterior
distribution (by Hamiltonian Monte Carlo) for the differences in means for
each peptide in the data. Once the posterior is inferred, it integrates the
tails to estimate the probability of error from which a statistical decision
can be made.
See Berg and Popescu for details ().
How to cite:
Philip Berg (2023). baldur: Bayesian Hierarchical Modeling for Label-Free Proteomics. R package version 0.0.3, https://cran.r-project.org/web/packages/baldur. Accessed 14 Apr. 2025.
Other packages that cited baldur R package
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Other R packages that baldur depends,
imports, suggests or enhances
Complete documentation for baldur
Functions, R codes and Examples using
the baldur R package
Some associated functions: baldur-package . calculate_mean_sd_trends . empirical_bayes . estimate_gamma_hyperparameters . estimate_uncertainty . fit_gamma_regression . fit_lgmr . infer_data_and_decision_model . lgmr_model . lgmr_plotting . pipe . plot_gamma . plot_gamma_regression . plot_sa . plot_volcano . psrn . ups . weakly_informative . yeast .
Some associated R codes: baldur-package.R . calculate_mean_sd_trends.R . check_target.R . empirical_bayes.R . estimate_priors.R . estimate_uncertainty.R . fit_gamma_regression.R . fit_lgmr.R . lgmr_model.R . lgmr_plotting.R . plot_gamma_regression.R . plot_sa.R . plot_volcano.R . psrn.R . sample_posterior.R . stanmodels.R . ups.R . utils-pipe.R . weakly_informative.R . yeast.R . zzz.R . Full baldur package functions and examples
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