R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
bakR
View on CRAN: Click
here
Download and install bakR package within the R console
Install from CRAN:
install.packages("bakR")
Install from Github:
library("remotes")
install_github("cran/bakR")
Install by package version:
library("remotes")
install_version("bakR", "1.0.1")
Attach the package and use:
library("bakR")
Maintained by
Isaac Vock
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-10-10
Latest Update: 2023-06-29
Description:
Several implementations of a novel Bayesian hierarchical statistical model of nucleotide
recoding RNA-seq experiments (NR-seq; TimeLapse-seq, SLAM-seq, TUC-seq, etc.)
for analyzing and comparing NR-seq datasets (see 'Vock and Simon' (2023) ).
NR-seq is a powerful extension of RNA-seq that provides information about the kinetics
of RNA metabolism (e.g., RNA degradation rate constants), which is notably lacking
in standard RNA-seq data. The statistical model makes maximal use of these high-throughput
datasets by sharing information across transcripts to significantly improve
uncertainty quantification and increase statistical power. 'bakR' includes a maximally
efficient implementation of this model for conservative initial investigations of datasets. 'bakR'
also provides more highly powered implementations using the probabilistic programming language
'Stan' to sample from the full posterior distribution. 'bakR' performs multiple-test
adjusted statistical inference with the output of these model implementations to
help biologists separate signal from background. Methods to automatically visualize key
results and detect batch effects are also provided.
How to cite:
Isaac Vock (2022). bakR: Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets. R package version 1.0.1, https://cran.r-project.org/web/packages/bakR. Accessed 22 Dec. 2024.
Previous versions and publish date:
Other packages that cited bakR R package
View bakR citation profile
Other R packages that bakR depends,
imports, suggests or enhances
Complete documentation for bakR
Functions, R codes and Examples using
the bakR R package
Some associated functions: CorrectDropout . DissectMechanism . FnPCA . FnPCA2 . GS_table . GSprocessing . Heatmap_kdeg . NSSHeat . QC_checks . QuantifyDropout . Simulate_bakRData . Simulate_relative_bakRData . TL_stan . VisualizeDropout . avg_and_regularize . bakR-package . bakRData . bakRFit . bakRFnData . cB_small . cBprocess . fast_analysis . fn_process . fns . metadf . new_bakRData . new_bakRFnData . plotMA . plotVolcano . reliableFeatures . validate_bakRData . validate_bakRFnData .
Some associated R codes: Dropout_correction.R . Fast_analysis.R . Fitting_Models.R . GS_table_data.R . GSprocessing.R . NSSHeat.R . QC.R . Simulations.R . TL_stan.R . Visualizations.R . bakR-package.R . bakRData.R . cB_small_data.R . cBprocessing.R . fns_data.R . metadf_data.R . stanmodels.R . Full bakR package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
tropAlgebra
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Muhammad Kashif Hanif (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
dmlalg
Implementation of double machine learning (DML) algorithms in R,
based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Corinne Emmenegger (view profile)
elect
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Ardo van den Hout (view profile)
composits
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Sevvandi Kandanaarachchi (view profile)
wordspace
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Stephanie Evert (view profile)