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babette
View on CRAN: Click
here
Download and install babette package within the R console
Install from CRAN:
install.packages("babette")
Install from Github:
library("remotes")
install_github("cran/babette") Install by package version:
library("remotes")
install_version("babette", "2.3.4") Attach the package and use:
library("babette")
Maintained by
Richèl J.C. Bilderbeek
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-01-11
Latest Update: 2024-06-25
Description:
'BEAST2' () is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAST2' is commonly accompanied by 'BEAUti 2', 'Tracer' and 'DensiTree'.
'babette' provides for an alternative workflow of using
all these tools separately. This allows doing complex Bayesian
phylogenetics easily and reproducibly from 'R'.
How to cite:
Richèl J.C. Bilderbeek (2020). babette: Control 'BEAST2'. R package version 2.3.4, https://cran.r-project.org/web/packages/babette. Accessed 07 Aug. 2026.
Previous versions and publish date:
Other packages that cited babette R package
View babette citation profile
Other R packages that babette depends,
imports, suggests or enhances
Complete documentation for babette
Functions, R codes and Examples using
the babette R package
Some associated functions: babette . bbt_continue . bbt_delete_temp_files . bbt_run . bbt_run_from_model . bbt_self_test . check_beast2_pkgs . create_test_bbt_run_output . create_test_ns_output . default_params_doc . get_alignment_ids_from_xml . get_babette_path . get_babette_paths . parse_beast2_output . parse_beast2_output_to_ns . plot_densitree . prepare_file_creation . update_babette .
Some associated R codes: babette.R . bbt_continue.R . bbt_delete_temp_files.R . bbt_run.R . bbt_run_from_model.R . bbt_self_test.R . check_beast2_pkgs.R . create_test_bbt_run_output.R . create_test_ns_output.R . default_params_doc.R . get_alignment_ids_from_xml.R . get_babette_path.R . get_babette_paths.R . parse_beast2_output.R . parse_beast2_output_to_ns.R . plot_densitree.R . prepare_file_creation.R . update_babette.R . Full babette package functions and examples
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