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babelgene  

Gene Orthologs for Model Organisms in a Tidy Data Format
View on CRAN: Click here


Download and install babelgene package within the R console
Install from CRAN:
install.packages("babelgene")

Install from Github:
library("remotes")
install_github("cran/babelgene")

Install by package version:
library("remotes")
install_version("babelgene", "22.9")



Attach the package and use:
library("babelgene")
Maintained by
Igor Dolgalev
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-26
Latest Update: 2022-09-29
Description:
Genomic analysis of model organisms frequently requires the use of databases based on human data or making comparisons to patient-derived resources. This requires harmonization of gene names into the same gene space. The 'babelgene' R package converts between human and non-human gene orthologs/homologs. The package integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 , Eyre et al. 2007 , Seal et al. 2011 ).
How to cite:
Igor Dolgalev (2021). babelgene: Gene Orthologs for Model Organisms in a Tidy Data Format. R package version 22.9, https://cran.r-project.org/web/packages/babelgene. Accessed 21 Nov. 2024.
Previous versions and publish date:
21.4 (2021-04-26 09:40), 22.3 (2022-03-30 18:30)
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Complete documentation for babelgene
Functions, R codes and Examples using the babelgene R package
Some associated functions: orthologs . species . 
Some associated R codes: functions.R .  Full babelgene package functions and examples
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