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autothresholdr  

An R Port of the 'ImageJ' Plugin 'Auto Threshold'
View on CRAN: Click here


Download and install autothresholdr package within the R console
Install from CRAN:
install.packages("autothresholdr")

Install from Github:
library("remotes")
install_github("cran/autothresholdr")

Install by package version:
library("remotes")
install_version("autothresholdr", "1.4.3")



Attach the package and use:
library("autothresholdr")
Maintained by
Rory Nolan
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-02-24
Latest Update: 2023-12-13
Description:
Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See and Landini et al. (2017) .
How to cite:
Rory Nolan (2017). autothresholdr: An R Port of the 'ImageJ' Plugin 'Auto Threshold'. R package version 1.4.3, https://cran.r-project.org/web/packages/autothresholdr. Accessed 26 Jun. 2026.
Previous versions and publish date:
0.2.0 (2017-02-24 08:31), 0.4.0 (2017-04-23 18:43), 0.5.0 (2017-05-17 18:33), 0.6.0 (2017-07-06 01:20), 1.1.0 (2018-01-23 16:13), 1.1.1 (2018-01-28 17:36), 1.1.2 (2018-02-13 17:06), 1.2.0 (2018-03-25 18:20), 1.2.1 (2018-07-09 15:20), 1.3.0 (2018-11-05 10:30), 1.3.1 (2019-05-21 21:00), 1.3.2 (2019-05-30 13:20), 1.3.3 (2019-06-12 16:40), 1.3.4 (2019-06-28 17:40), 1.3.5 (2019-07-08 14:10), 1.3.6 (2020-05-08 12:50), 1.3.7 (2020-10-10 18:50), 1.3.9 (2020-10-18 06:30), 1.3.10 (2021-04-19 07:20), 1.3.11 (2021-05-12 08:02), 1.3.12 (2021-11-18 19:30), 1.4.0 (2022-01-04 13:10), 1.4.1 (2023-01-28 20:40), 1.4.2 (2023-12-13 07:00)
Other packages that cited autothresholdr R package
View autothresholdr citation profile
Other R packages that autothresholdr depends, imports, suggests or enhances
Complete documentation for autothresholdr
Functions, R codes and Examples using the autothresholdr R package
Some associated functions: auto_thresh . masked_arr . mean_stack_thresh . med_stack_thresh . stack_threshed_img . th . threshed_arr . 
Some associated R codes: RcppExports.R . argchk.R . autothresholdr.R . class_constructors.R . stack_thresh.R . thresh.R . utils.R .  Full autothresholdr package functions and examples
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