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autoGO
View on CRAN: Click
here
Download and install autoGO package within the R console
Install from CRAN:
install.packages("autoGO")
Install from Github:
library("remotes")
install_github("cran/autoGO")
Install by package version:
library("remotes")
install_version("autoGO", "0.9.1")
Attach the package and use:
library("autoGO")
Maintained by
Fabio Ticconi
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-16
Latest Update: 2023-02-13
Description:
Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) . The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce.
How to cite:
Fabio Ticconi (2023). autoGO: Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations. R package version 0.9.1, https://cran.r-project.org/web/packages/autoGO. Accessed 22 Dec. 2024.
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Other R packages that autoGO depends,
imports, suggests or enhances
Complete documentation for autoGO
Functions, R codes and Examples using
the autoGO R package
Some associated functions: autoGO . barplotGO . choose_database . comparisons . counts . deseq_analysis . filtering_DE . groups . heatmapGO . lolliGO . read_enrich_tables . read_gene_lists . volcanoplot .
Some associated R codes: autoGO-package.R . autoGO.R . barplotGO.R . choose_database.R . data.R . deseq_analysis.R . filtering_DE.R . heatmapGO.R . lolliGO.R . read_enrich_tables.R . read_gene_lists.R . volcanoplot.R . Full autoGO package functions and examples
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