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archipelago  

Visualising Variant Set Association Test Results
View on CRAN: Click here


Download and install archipelago package within the R console
Install from CRAN:
install.packages("archipelago")

Install from Github:
library("remotes")
install_github("cran/archipelago")

Install by package version:
library("remotes")
install_version("archipelago", "0.1.0")



Attach the package and use:
library("archipelago")
Maintained by
Dylan Lawless
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-02-10
Latest Update: 2026-02-10
Description:
Provides a graphical method for joint visualisation of Variant Set Association Test (VSAT) results and individual variant association statistics. The Archipelago method assigns genomic coordinates to variant set statistics, allowing simultaneous display of variant-level and set-level signals in a unified plot. This supports interpretation of both collective and individual variant contributions in genetic association studies using variant aggregation approaches. For more see Lawless et al. (2026) <doi:10.1002/gepi.70025>.
How to cite:
Dylan Lawless (2026). archipelago: Visualising Variant Set Association Test Results. R package version 0.1.0, https://cran.r-project.org/web/packages/archipelago. Accessed 05 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited archipelago R package
View archipelago citation profile
Other R packages that archipelago depends, imports, suggests or enhances
Complete documentation for archipelago
Functions, R codes and Examples using the archipelago R package
Full archipelago package functions and examples
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